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annotate val_metadata.xml @ 0:3e50c089a039 draft default tip

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planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
author ecology
date Mon, 09 Jan 2023 13:56:07 +0000
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3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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1 <tool id="srs_metadata" name="Validate ISO 19139" version="@VERSION@" profile="20.01">
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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2 <description>metadata documents</description>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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3 <macros>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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4 <import>macro.xml</import>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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5 </macros>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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6 <requirements>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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7 <requirement type="package" version="4.2.2">r-base</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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8 <requirement type="package" version="2.12.2">r-r.utils</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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9 <requirement type="package" version="3.5_21">r-raster</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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10 <requirement type="package" version="1.0_7">r-sf</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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11 <requirement type="package" version="1.5_32">r-rgdal</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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12 <requirement type="package" version="0.6_1">r-rgeos</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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13 <requirement type="package" version="0.5_5">r-stars</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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14 <requirement type="package" version="1.5.0">r-stringr</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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15 <requirement type="package" version="1.20">r-ncdf4</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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16 <requirement type="package" version="0.7">r-geometa</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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17 <requirement type="package" version="1.4.4">r-httr</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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18 <requirement type="package" version="3.99_0.13">r-xml</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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19 <requirement type="package" version="1.3.3">r-xml2</requirement>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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20 </requirements>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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21 <command detect_errors="exit_code"><![CDATA[
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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22 Rscript
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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23 '$__tool_directory__/val_metadata.r'
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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24 '$input'
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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25 '$output' 1> Metadata_validation.txt
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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26 ]]>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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27 </command>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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28 <inputs>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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29 <param name="input" type="data" format="xml" label="XML file to validate"/>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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30 </inputs>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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31 <outputs>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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32 <data name="output" from_work_dir="Metadata_validation.txt" format="txt" label="Validate metadata"/>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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33 </outputs>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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34 <tests>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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35 <test>
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36 <param name="input" value="12a0b625-9ad5-4251-a57a-305e22edef2e.xml"/>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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37 <output name="output" value="Metadata_validation.txt"/>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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38 </test>
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39 </tests>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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40 <help><![CDATA[
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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41 ==========================
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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42 Preprocess Sentinel 2 data
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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43 ==========================
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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44
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45
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46 **What it does**
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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47
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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48 Read a ISO 19139 from a file or url into an object in the geometa model.
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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49
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50 **Input description**
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51
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52 A metadata xml file or url.
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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53
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54 +-------------+
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55 | Metadata |
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56 +=============+
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57 | file or url |
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58 +-------------+
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59 | ... |
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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60 +-------------+
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61
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62 **Output**
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63
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64 A text file saying TRUE or FALSE depending on if the xml metadata are conforme according to ISO 19139. If the xml metadata is not conform it will write down where are the issues.
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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65 ]]> </help>
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66 <expand macro="SRS_metaref"/>
3e50c089a039 planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit b32737c1642aa02cc672534e42c5cb4abe0cd3e7
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67 </tool>