# HG changeset patch
# User ecology
# Date 1624691923 0
# Node ID 43996fa543ea1d3a3ac28a692b94b540ff6f3601
# Parent  a92b88040565ba6ecdd9438820e1bb7f84bd122d
"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit 65ab5b6fe84871db0fe18244d805cea19a44e830"

diff -r a92b88040565 -r 43996fa543ea PAMPA_GLM_SP.xml
--- a/PAMPA_GLM_SP.xml	Mon Apr 26 16:03:56 2021 +0000
+++ b/PAMPA_GLM_SP.xml	Sat Jun 26 07:18:43 2021 +0000
@@ -101,9 +101,9 @@
 
 It allows user to choose composition of the model :
 
-- Interest variable among numeric or integer variables of the input file
+- Response variable among numeric or integer variables of the input file
 
-- Response variables among year, site and/or habitat
+- Explanatory variables among year, site and/or habitat
 
 - Allocation of random effect on year and/or site
 
@@ -139,15 +139,15 @@
 
 The first input may be extracted from the 'Calculate presence absence' tool.
 
-A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column.
+A tabular file with observation unit data which contains at least as much columns as used explanatory variables in addition with the 'observation.unit' column.
 
-+-------------------+--------------+---------+--------+------------+-----+       
-| observation.unit  | species.code |  site   |  year  |  habitat   | ... |            
-+===================+==============+=========+========+============+=====+        
-|  year_locationID  | species code | site ID |  2000  | habitatID  | ... |            
-+-------------------+--------------+---------+--------+------------+-----+        
-|        ...        |      ...     |   ...   |   ...  |     ...    | ... |       
-+-------------------+--------------+---------+--------+------------+-----+ 
++-------------------+---------+--------+------------+-----+       
+| observation.unit  |  site   |  year  |  habitat   | ... |            
++===================+=========+========+============+=====+        
+|  year_locationID  | site ID |  2000  | habitatID  | ... |            
++-------------------+---------+--------+------------+-----+        
+|        ...        |   ...   |   ...  |     ...    | ... |       
++-------------------+---------+--------+------------+-----+ 
 
 The site may represent the same entity as the location or represent an aggregation of several locations.
 
diff -r a92b88040565 -r 43996fa543ea pampa_macros.xml
--- a/pampa_macros.xml	Mon Apr 26 16:03:56 2021 +0000
+++ b/pampa_macros.xml	Sat Jun 26 07:18:43 2021 +0000
@@ -54,10 +54,10 @@
     <xml name="pampa_input_GLM">
         <param name="input_metric" type="data" format="tabular" label="Input metrics file" help="Metrics data file, with location, year, and metrics informations that can be used as interest variable."/>
         <param name="input_unitobs" type="data" format="tabular" label="Unitobs informations file" help="Unitobs file, with all informations available about unitobs."/>
-        <param name="varint" type="data_column" data_ref="input_metric" use_header_names="true" label="Interest variable from metrics file" help= "Choose the field of the interest variable."/>
+        <param name="varint" type="data_column" data_ref="input_metric" numerical="true" use_header_names="true" label="Response variable from metrics file" help= "Choose the field of the response variable."/>
     </xml>
     <xml name="pampa_var_GLM">
-        <param name="varrep" type="select" label="Response variables" help= "Choose the response variables you want to include in your analysis." multiple="true">
+        <param name="varrep" type="select" label="Explanatory variables" help= "Choose the explanatory variables you want to include in your analysis." multiple="true">
             <option selected="true" value="year">Year</option>
             <option selected="true" value="site">Site</option>
             <option selected="true" value="habitat">Habitat</option>