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comparison obisindicators.xml @ 1:51b30155533d draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit d1d3e8640457c30349b842ea05de64b9312890f4
author ecology
date Wed, 25 Jan 2023 16:01:36 +0000
parents 7899febbfb94
children 52e560d9fc00
comparison
equal deleted inserted replaced
0:7899febbfb94 1:51b30155533d
29 '$longitude' 29 '$longitude'
30 '$latitude' 30 '$latitude'
31 '$species' 31 '$species'
32 '$records' 32 '$records'
33 '$type' 33 '$type'
34 '$resolution'
34 '$__tool_directory__/analyze.r' 35 '$__tool_directory__/analyze.r'
35 '$__tool_directory__/visualize.r' 36 '$__tool_directory__/visualize.r'
36 '$__tool_directory__/data.r' 37 '$__tool_directory__/data.r'
37 '$output_index' 38 '$output_index'
38 '$plots' 39 '$plots'
39 ]]> 40 ]]>
40 </command> 41 </command>
41 <inputs> 42 <inputs>
42 <expand macro="SRS_input"/> 43 <expand macro="SRS_input"/>
43 <param name="separator" type="select" display="radio" label="What character is the separator in your data? (Mostlikely a comma for a csv file and t for a tabular)"> 44 <param name="separator" type="select" display="radio" label="What character is the separator in your data? (Mostlikely a comma for a csv file and t for a tabular)">
45 <option value="t">Tabulator (\t)</option>
44 <option value=",">Comma (,)</option> 46 <option value=",">Comma (,)</option>
45 <option value="t">Tabulator (\t)</option>
46 </param> 47 </param>
47 <param name="longitude" label="Select column containing the decimal value of the longitude " type="data_column" data_ref="input" numerical="true" use_header_names="true"/> 48 <param name="longitude" label="Select column containing the decimal value of the longitude " type="data_column" data_ref="input" numerical="true" use_header_names="true"/>
48 <param name="latitude" label="Select column containing the decimal value of the latitude " type="data_column" data_ref="input" numerical="true" use_header_names="true"/> 49 <param name="latitude" label="Select column containing the decimal value of the latitude " type="data_column" data_ref="input" numerical="true" use_header_names="true"/>
49 <param name="species" label="Select column containing the species " type="data_column" data_ref="input" use_header_names="true"/> 50 <param name="species" label="Select column containing the species " type="data_column" data_ref="input" use_header_names="true"/>
50 <param name="records" label="Select column containing the number of records" type="data_column" data_ref="input" numerical="true" use_header_names="true"/> 51 <param name="records" label="Select column containing the number of records" type="data_column" data_ref="input" numerical="true" use_header_names="true"/>
51 <param name="type" type="select" label="Type of projection for the map : select your coordinate reference system (CRS)"> 52 <param name="type" type="select" label="Type of projection for the map : select your coordinate reference system (CRS)">
52 <option value="0">Robinson projection</option> 53 <option value="0">Robinson projection</option>
53 <option value="4326">Geographic projection</option> 54 <option value="4326">Geographic projection</option>
54 </param> 55 </param>
56 <param name="resolution" label="Write a number between 1 and 30" type="text" data_ref="input" help="We strongly advise to stay below 15 or else you won't see a thing. The bigger your dataset is the smaller the resolution should be."/>
55 </inputs> 57 </inputs>
56 <outputs> 58 <outputs>
57 <data name="output_index" from_work_dir="Index.csv" format="csv" label="Index"> 59 <data name="output_index" from_work_dir="Index.csv" format="csv" label="Index">
58 </data> 60 </data>
59 <collection type="list" name="plots"> 61 <collection type="list" name="plots">
68 <param name="longitude" value="c1: decimalLongitude"/> 70 <param name="longitude" value="c1: decimalLongitude"/>
69 <param name="latitude" value="c2: decimalLatitude"/> 71 <param name="latitude" value="c2: decimalLatitude"/>
70 <param name="species" value="c3: species"/> 72 <param name="species" value="c3: species"/>
71 <param name="records" value="c5: records"/> 73 <param name="records" value="c5: records"/>
72 <param name="type" value="0"/> 74 <param name="type" value="0"/>
75 <param name="resolution" value="9"/>
73 <output name="output_index" value="Index.csv"/> 76 <output name="output_index" value="Index.csv"/>
74 <output_collection name="plots" type="list" count="5"> 77 <output_collection name="plots" type="list" count="5">
75 <element name="ES_50" ftype="png"> 78 <element name="ES_50" ftype="png">
76 <assert_contents> 79 <assert_contents>
77 <has_text text="PNG"/> 80 <has_text text="PNG"/>