Mercurial > repos > ecology > harmonize_insitu_to_netcdf
changeset 2:71d66fc8087d draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/bgc_ocean commit 38f258b108edc5aa9279cc7719adf4b86caeffa7
author | ecology |
---|---|
date | Wed, 11 Jun 2025 12:09:57 +0000 |
parents | 2351461be706 |
children | |
files | bgc_harmonizer.xml |
diffstat | 1 files changed, 10 insertions(+), 11 deletions(-) [+] |
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--- a/bgc_harmonizer.xml Tue Mar 18 18:15:55 2025 +0000 +++ b/bgc_harmonizer.xml Wed Jun 11 12:09:57 2025 +0000 @@ -2,10 +2,10 @@ <description>and aggregator of in-situ marine physical and biogeochemical data</description> <macros> <token name="@TOOL_VERSION@">2.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <requirements> - <container type="docker">pokapok/qcv_ingester:@TOOL_VERSION@</container> + <container type="docker">easyqcvbgc/qcv_ingester:@TOOL_VERSION@</container> </requirements> <command detect_errors="exit_code"><![CDATA[ export HOME=\$PWD && @@ -15,23 +15,22 @@ #end for /app/launchers/start-app.sh GALAXY && - - cp /runtime/data-out/*.nc '$output_net' - ]]></command> + + mkdir ./output/ && + cp /runtime/data-out/*.nc ./output/ + ]]></command> <inputs> <param name="infiles" type="data" format="netcdf" multiple="true" label="Input the NetCDF data files" help="This files can NetCDF raw Argo or Gliders data files following CMEMS convention."/> </inputs> <outputs> - <data name="output_net" format="netcdf" label="${tool.name} NetCDF data" /> + <collection type="list" name="output_net" format="netcdf"> + <discover_datasets pattern="(?P<designation>.+)" directory="./output/" visible="true"/> + </collection> </outputs> <tests> <test expect_num_outputs="1"> <param name="infiles" value="D6901758_001.nc,D6901758_002.nc,D6901758_003.nc,D6901758_004.nc,D6901758_005.nc"/> - <output name="output_net"> - <assert_contents> - <has_size value="480666" delta="0"/> - </assert_contents> - </output> + <output_collection name="output_net" type="list" count="1"/> </test> </tests> <help><![CDATA[