Mercurial > repos > ecology > ecoregion_brt_analysis

comparison BRT_model.xml @ 3:d63d74194100 draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit ced658540f05bb07e1e687af30a3fa4ea8e4803c
author ecology
date Wed, 28 May 2025 10:10:52 +0000
parents 300aebed3d7f
children
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2:44dcc1ae3489 3:d63d74194100
1 <tool id="ecoregion_brt_analysis" name="BRT tool prediction" version="0.1.0+galaxy0" profile="22.05"> 1 <tool id="ecoregion_brt_analysis" name="BRT tool prediction" version="0.1.2+galaxy0" profile="23.2">
2 <description>for species distribution modelling</description> 2 <description>for species distribution modelling</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.3">r-base</requirement> 4 <requirement type="package" version="4.3.3">r-base</requirement>
5 <requirement type="package" version="2.1.8">r-gbm</requirement> 5 <requirement type="package" version="2.1.8">r-gbm</requirement>
6 <requirement type="package" version="3.4.2">r-ggplot2</requirement> 6 <requirement type="package" version="3.4.2">r-ggplot2</requirement>
20 '$dec_species' 20 '$dec_species'
21 ]]></command> 21 ]]></command>
22 <inputs> 22 <inputs>
23 <param name="enviro" type="data" format="tabular" label="Input your environment data file of your study area (tabular format only)" help="See example below"/> 23 <param name="enviro" type="data" format="tabular" label="Input your environment data file of your study area (tabular format only)" help="See example below"/>
24 <param name="dec_env" type="select" label="What's the decimal separator of your environement data file ?"> 24 <param name="dec_env" type="select" label="What's the decimal separator of your environement data file ?">
25 <option value=".">Dot</option> 25 <option value="Dot">Dot</option>
26 <option value=",">Comma</option> 26 <option value="Comma">Comma</option>
27 </param> 27 </param>
28 <param type="data" name="species_files" label="Input your occurrences data file(s) containing also the environemental caracteristics where the species has been observe (tabular format only)" format="tabular" multiple="True" help="See example below"/> 28 <param type="data" name="species_files" label="Input your occurrences data file(s) containing also the environemental caracteristics where the species has been observe (tabular format only)" format="tabular" multiple="True" help="See example below"/>
29 <param name="dec_species" type="select" label="What's the decimal separator of your occurrences data file(s) ?" help="It must be the same for all your occurences data files" > 29 <param name="dec_species" type="select" label="What's the decimal separator of your occurrences data file(s) ?" help="It must be the same for all your occurences data files">
30 <option value=".">Dot</option> 30 <option value="Dot">Dot</option>
31 <option value=",">Comma</option> 31 <option value="Comma">Comma</option>
32 </param> 32 </param>
33 <param name="abioticname" type="data_column" label="Choose column(s) where your abiotic parameter are in your environment data file." data_ref="enviro" multiple="true" use_header_names="true"/> 33 <param name="abioticname" type="data_column" label="Choose column(s) where your abiotic parameter are in your environment data file." data_ref="enviro" multiple="true" use_header_names="true"/>
34 </inputs> 34 </inputs>
35 <outputs> 35 <outputs>
36 <collection name="outputpred" type="list" label="Prediction files"> 36 <collection name="outputpred" type="list" label="Prediction files">
110 <citation type="doi">10.32614/CRAN.package.dismo</citation> 110 <citation type="doi">10.32614/CRAN.package.dismo</citation>
111 <citation type="doi">10.32614/CRAN.package.gbm</citation> 111 <citation type="doi">10.32614/CRAN.package.gbm</citation>
112 <citation type="doi">10.32614/CRAN.package.ggplot2</citation> 112 <citation type="doi">10.32614/CRAN.package.ggplot2</citation>
113 </citations> 113 </citations>
114 </tool> 114 </tool>
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