Mercurial > repos > ecology > argo_getdata

annotate argo_getdata.xml @ 1:81cb06b63981 draft default tip

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author ecology
date Tue, 22 Oct 2024 15:54:42 +0000
parents 8a1b829b5d27
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1 <tool id="argo_getdata" name="Argo data access" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
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2 <description>for global ocean in situ observing system</description>
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3 <macros>
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4 <import>macro.xml</import>
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5 </macros>
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6 <expand macro="argo_requirements">
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7 </expand>
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8 <required_files>
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9 <include type="literal" path="argo_getdata.py"/>
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10 <include type="literal" path="macro.xml"/>
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11 </required_files>
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12 <command detect_errors="exit_code"><![CDATA[
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13 python '$__tool_directory__/argo_getdata.py'
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14 --user=$user
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15 #if $selection.data_selection == 'space_time':
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16 --cardinal_1=$selection.cardinal_1
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17 --cardinal_2=$selection.cardinal_2
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18 --cardinal_3=$selection.cardinal_3
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19 --cardinal_4=$selection.cardinal_4
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20 --pressure_1=$selection.pressure_1
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21 --pressure_2=$selection.pressure_2
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22 --date_1=$selection.date_1
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23 --date_2=$selection.date_2
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24 #else if $selection.data_selection == 'floats':
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25 --wmo=$selection.wmo
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26 #else:
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27 --wmo=$selection.wmo
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28 --profile=$selection.profile
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29 #end if
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30 #if $dataset.data_dataset == 'bgc' :
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31 --params=$dataset.params
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32 --measured=$dataset.measured
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33 #end if
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34 --output_argo='$output_argo'
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35 ]]>
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36 </command>
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37 <inputs>
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38 <param name="user" type="select" label="We have preconfigured some mode of operations for you. What mode do you want to use?">
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39 <option value="standard">🏊 standard mode simplifies the dataset, remove most of its jargon and return a priori good data</option>
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40 <option value="research">🚣 research mode simplifies the dataset to its heart, preserving only data of the highest quality for research studies, including studies sensitive to small pressure and salinity bias </option>
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41 <option value="expert">πŸ„ expert mode return all the Argo data, without any postprocessing</option>
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42 </param>
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43 <conditional name="selection">
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44 <param name="data_selection" type="select" label="How do you want to select your data of interest ?">
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45 <option value="space_time">πŸ—Ί For a space/time domain</option>
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46 <option value="floats">πŸ€– For one or more floats</option>
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47 <option value="profiles">βš“ For one or more profiles</option>
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48 </param>
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49 <when value="space_time">
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50 <param name="cardinal_1" type="float" min="-90" max="90" value="0" label="Input longitude min (+east/-west):"/>
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51 <param name="cardinal_2" type="float" min="-90" max="90" value="0" label="Input longitude max (+east/-west):"/>
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52 <param name="cardinal_3" type="float" min="-90" max="90" value="0" label="Input latitude min (+north/-south):"/>
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53 <param name="cardinal_4" type="float" min="-90" max="90" value="0" label="Input latitude max (+north/-south):"/>
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54 <param name="pressure_1" type="float" value="0" label="Input pressure min (db)"/>
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55 <param name="pressure_2" type="float" value="0" label="Input pressure max (db)"/>
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56 <param name="date_1" type="text" optional="true" label="Input starting date" value="yyyy-mm"/>
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57 <param name="date_2" type="text" optional="true" label="Input ending date" value="yyyy-mm"/>
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58 </when>
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59 <when value="floats">
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60 <param name="wmo" type="text" label="Input WMO number" help="If you want to enter multiple ones just separate them with a comma (example : 6902746, 6902755)"/>
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61 </when>
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62 <when value="profiles">
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63 <param name="wmo" type="integer" value="0" label="Input WMO number" />
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64 <param name="profile" type="text" multiple="true" value="0" label="Input profile cycle number" help="if you want to enter multiple ones just separate them with a comma (example : 3,12)"/>
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65 </when>
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66 </conditional>
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67 <!--<conditional name="sources">
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68 <param name="data_sources" type="select" label="From where do you want to get your data ?">
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69 <option value="erddap">⭐ the Ifremer erddap server </option>
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70 <option value="gdac">🌐 an Argo GDAC server or any other GDAC-compliant local folder.</option>
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71 <option value="argovis">πŸ‘ the Argovis server.</option>
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72 </param>
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73 <when value="erddap"/>
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74 <when value="gdac">
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75 <param name="ftp" type="select" label="Input ftp server url">
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76 <option value="ftp://ftp.ifremer.fr/ifremer/argo">France Coriolis</option>
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77 <option value="ftp://usgodae.org/pub/outgoing/argo">US GODAE</option>
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78 </param>
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79 </when>
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80 <when value="argovis"/>
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81 </conditional>-->
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82 <conditional name="dataset">
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83 <param name="data_dataset" type="select" label="Which kind of dataset do you want ?" help="At this time, BGC parameters are only available in expert user mode.">
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84 <option value="phy">Physical parameters: temperature, salinity, pressure</option>
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85 <option value="bgc">Biogeochemical parameters: temperature, salinity, pressure and oxygen, pH, nitrate, chlorophyll, backscatter, irradiance</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
86 </param>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
87 <when value="phy"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
88 <when value="bgc">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
89 <param name="params" type="select" multiple="true" label="Choose which variable you want to study">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
90 <option value="BBP532">BBP532</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
91 <option value="BBP532_ADJUSTED">BBP532_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
92 <option value="BBP532_ADJUSTED_ERROR">BBP532_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
93 <option value="BBP532_ADJUSTED_QC">BBP532_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
94 <option value="BBP532_DATA_MODE">BBP532_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
95 <option value="BBP532_QC">BBP532_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
96 <option value="BBP700">BBP700</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
97 <option value="BBP700_ADJUSTED">BBP700_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
98 <option value="BBP700_ADJUSTED_ERROR">BBP700_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
99 <option value="BBP700_ADJUSTED_QC">BBP700_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
100 <option value="BBP700_DATA_MODE">BBP700_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
101 <option value="BBP700_QC">BBP700_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
102 <option value="CHLA">CHLA</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
103 <option value="CHLA_ADJUSTED">CHLA_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
104 <option value="CHLA_ADJUSTED_ERROR">CHLA_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
105 <option value="CHLA_ADJUSTED_QC">CHLA_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
106 <option value="CHLA_DATA_MODE">CHLA_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
107 <option value="CHLA_QC">CHLA_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
108 <option value="CONFIG_MISSION_NUMBER">CONFIG_MISSION_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
109 <option value="CYCLE_NUMBER">CYCLE_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
110 <option value="DIRECTION">DIRECTION</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
111 <option value="DOWNWELLING_PAR">DOWNWELLING_PAR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
112 <option value="DOWNWELLING_PAR_ADJUSTED">DOWNWELLING_PAR_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
113 <option value="DOWNWELLING_PAR_ADJUSTED_ERROR">DOWNWELLING_PAR_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
114 <option value="DOWNWELLING_PAR_ADJUSTED_QC">DOWNWELLING_PAR_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
115 <option value="DOWNWELLING_PAR_DATA_MODE">DOWNWELLING_PAR_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
116 <option value="DOWNWELLING_PAR_QC">DOWNWELLING_PAR_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
117 <option value="DOWN_IRRADIANCE380">DOWN_IRRADIANCE380</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
118 <option value="DOWN_IRRADIANCE380_ADJUSTED">DOWN_IRRADIANCE380_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
119 <option value="DOWN_IRRADIANCE380_ADJUSTED_ERROR">DOWN_IRRADIANCE380_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
120 <option value="DOWN_IRRADIANCE380_ADJUSTED_QC">DOWN_IRRADIANCE380_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
121 <option value="DOWN_IRRADIANCE380_DATA_MODE">DOWN_IRRADIANCE380_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
122 <option value="DOWN_IRRADIANCE380_QC">DOWN_IRRADIANCE380_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
123 <option value="DOWN_IRRADIANCE412">DOWN_IRRADIANCE412</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
124 <option value="DOWN_IRRADIANCE412_ADJUSTED">DOWN_IRRADIANCE412_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
125 <option value="DOWN_IRRADIANCE412_ADJUSTED_ERROR">DOWN_IRRADIANCE412_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
126 <option value="DOWN_IRRADIANCE412_ADJUSTED_QC">DOWN_IRRADIANCE412_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
127 <option value="DOWN_IRRADIANCE412_DATA_MODE">DOWN_IRRADIANCE412_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
128 <option value="DOWN_IRRADIANCE412_QC">DOWN_IRRADIANCE412_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
129 <option value="DOWN_IRRADIANCE490">DOWN_IRRADIANCE490</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
130 <option value="DOWN_IRRADIANCE490_ADJUSTED">DOWN_IRRADIANCE490_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
131 <option value="DOWN_IRRADIANCE490_ADJUSTED_ERROR">DOWN_IRRADIANCE490_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
132 <option value="DOWN_IRRADIANCE490_ADJUSTED_QC">DOWN_IRRADIANCE490_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
133 <option value="DOWN_IRRADIANCE490_DATA_MODE">DOWN_IRRADIANCE490_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
134 <option value="DOWN_IRRADIANCE490_QC">DOWN_IRRADIANCE490_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
135 <option value="DOXY">DOXY</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
136 <option value="DOXY_ADJUSTED">DOXY_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
137 <option value="DOXY_ADJUSTED_ERROR">DOXY_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
138 <option value="DOXY_ADJUSTED_QC">DOXY_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
139 <option value="DOXY_DATA_MODE">DOXY_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
140 <option value="DOXY_QC">DOXY_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
141 <option value="NITRATE">NITRATE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
142 <option value="NITRATE_ADJUSTED">NITRATE_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
143 <option value="NITRATE_ADJUSTED_ERROR">NITRATE_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
144 <option value="NITRATE_ADJUSTED_QC">NITRATE_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
145 <option value="NITRATE_DATA_MODE">NITRATE_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
146 <option value="NITRATE_QC">NITRATE_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
147 <option value="PH_IN_SITU_TOTAL">PH_IN_SITU_TOTAL</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
148 <option value="PH_IN_SITU_TOTAL_ADJUSTED">PH_IN_SITU_TOTAL_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
149 <option value="PH_IN_SITU_TOTAL_ADJUSTED_ERROR">PH_IN_SITU_TOTAL_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
150 <option value="PH_IN_SITU_TOTAL_ADJUSTED_QC">PH_IN_SITU_TOTAL_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
151 <option value="PH_IN_SITU_TOTAL_DATA_MODE">PH_IN_SITU_TOTAL_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
152 <option value="PH_IN_SITU_TOTAL_QC">PH_IN_SITU_TOTAL_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
153 <option value="PLATFORM_NUMBER">PLATFORM_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
154 <option value="POSITION_QC">POSITION_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
155 <option value="PRES">PRES</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
156 <option value="PRES_ADJUSTED">PRES_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
157 <option value="PRES_ADJUSTED_ERROR">PRES_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
158 <option value="PRES_ADJUSTED_QC">PRES_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
159 <option value="PRES_DATA_MODE">PRES_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
160 <option value="PRES_QC">PRES_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
161 <option value="PSAL">PSAL</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
162 <option value="PSAL_ADJUSTED">PSAL_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
163 <option value="PSAL_ADJUSTED_ERROR">PSAL_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
164 <option value="PSAL_ADJUSTED_QC">PSAL_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
165 <option value="PSAL_DATA_MODE">PSAL_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
166 <option value="PSAL_QC">PSAL_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
167 <option value="TEMP">TEMP</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
168 <option value="TEMP_ADJUSTED">TEMP_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
169 <option value="TEMP_ADJUSTED_ERROR">TEMP_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
170 <option value="TEMP_ADJUSTED_QC">TEMP_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
171 <option value="TEMP_QC">TEMP_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
172 <option value="TIME_QC">TIME_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
173 </param>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
174 <param name="measured" type="select" multiple="true" label="Choose which variables cannot be NaN and must return value" optional="true">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
175 <option value="BBP532">BBP532</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
176 <option value="BBP532_ADJUSTED">BBP532_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
177 <option value="BBP532_ADJUSTED_ERROR">BBP532_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
178 <option value="BBP532_ADJUSTED_QC">BBP532_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
179 <option value="BBP532_DATA_MODE">BBP532_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
180 <option value="BBP532_QC">BBP532_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
181 <option value="BBP700">BBP700</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
182 <option value="BBP700_ADJUSTED">BBP700_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
183 <option value="BBP700_ADJUSTED_ERROR">BBP700_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
184 <option value="BBP700_ADJUSTED_QC">BBP700_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
185 <option value="BBP700_DATA_MODE">BBP700_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
186 <option value="BBP700_QC">BBP700_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
187 <option value="CHLA">CHLA</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
188 <option value="CHLA_ADJUSTED">CHLA_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
189 <option value="CHLA_ADJUSTED_ERROR">CHLA_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
190 <option value="CHLA_ADJUSTED_QC">CHLA_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
191 <option value="CHLA_DATA_MODE">CHLA_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
192 <option value="CHLA_QC">CHLA_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
193 <option value="CONFIG_MISSION_NUMBER">CONFIG_MISSION_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
194 <option value="CYCLE_NUMBER">CYCLE_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
195 <option value="DIRECTION">DIRECTION</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
196 <option value="DOWNWELLING_PAR">DOWNWELLING_PAR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
197 <option value="DOWNWELLING_PAR_ADJUSTED">DOWNWELLING_PAR_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
198 <option value="DOWNWELLING_PAR_ADJUSTED_ERROR">DOWNWELLING_PAR_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
199 <option value="DOWNWELLING_PAR_ADJUSTED_QC">DOWNWELLING_PAR_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
200 <option value="DOWNWELLING_PAR_DATA_MODE">DOWNWELLING_PAR_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
201 <option value="DOWNWELLING_PAR_QC">DOWNWELLING_PAR_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
202 <option value="DOWN_IRRADIANCE380">DOWN_IRRADIANCE380</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
203 <option value="DOWN_IRRADIANCE380_ADJUSTED">DOWN_IRRADIANCE380_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
204 <option value="DOWN_IRRADIANCE380_ADJUSTED_ERROR">DOWN_IRRADIANCE380_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
205 <option value="DOWN_IRRADIANCE380_ADJUSTED_QC">DOWN_IRRADIANCE380_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
206 <option value="DOWN_IRRADIANCE380_DATA_MODE">DOWN_IRRADIANCE380_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
207 <option value="DOWN_IRRADIANCE380_QC">DOWN_IRRADIANCE380_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
208 <option value="DOWN_IRRADIANCE412">DOWN_IRRADIANCE412</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
209 <option value="DOWN_IRRADIANCE412_ADJUSTED">DOWN_IRRADIANCE412_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
210 <option value="DOWN_IRRADIANCE412_ADJUSTED_ERROR">DOWN_IRRADIANCE412_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
211 <option value="DOWN_IRRADIANCE412_ADJUSTED_QC">DOWN_IRRADIANCE412_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
212 <option value="DOWN_IRRADIANCE412_DATA_MODE">DOWN_IRRADIANCE412_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
213 <option value="DOWN_IRRADIANCE412_QC">DOWN_IRRADIANCE412_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
214 <option value="DOWN_IRRADIANCE490">DOWN_IRRADIANCE490</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
215 <option value="DOWN_IRRADIANCE490_ADJUSTED">DOWN_IRRADIANCE490_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
216 <option value="DOWN_IRRADIANCE490_ADJUSTED_ERROR">DOWN_IRRADIANCE490_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
217 <option value="DOWN_IRRADIANCE490_ADJUSTED_QC">DOWN_IRRADIANCE490_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
218 <option value="DOWN_IRRADIANCE490_DATA_MODE">DOWN_IRRADIANCE490_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
219 <option value="DOWN_IRRADIANCE490_QC">DOWN_IRRADIANCE490_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
220 <option value="DOXY">DOXY</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
221 <option value="DOXY_ADJUSTED">DOXY_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
222 <option value="DOXY_ADJUSTED_ERROR">DOXY_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
223 <option value="DOXY_ADJUSTED_QC">DOXY_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
224 <option value="DOXY_DATA_MODE">DOXY_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
225 <option value="DOXY_QC">DOXY_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
226 <option value="NITRATE">NITRATE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
227 <option value="NITRATE_ADJUSTED">NITRATE_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
228 <option value="NITRATE_ADJUSTED_ERROR">NITRATE_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
229 <option value="NITRATE_ADJUSTED_QC">NITRATE_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
230 <option value="NITRATE_DATA_MODE">NITRATE_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
231 <option value="NITRATE_QC">NITRATE_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
232 <option value="PH_IN_SITU_TOTAL">PH_IN_SITU_TOTAL</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
233 <option value="PH_IN_SITU_TOTAL_ADJUSTED">PH_IN_SITU_TOTAL_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
234 <option value="PH_IN_SITU_TOTAL_ADJUSTED_ERROR">PH_IN_SITU_TOTAL_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
235 <option value="PH_IN_SITU_TOTAL_ADJUSTED_QC">PH_IN_SITU_TOTAL_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
236 <option value="PH_IN_SITU_TOTAL_DATA_MODE">PH_IN_SITU_TOTAL_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
237 <option value="PH_IN_SITU_TOTAL_QC">PH_IN_SITU_TOTAL_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
238 <option value="PLATFORM_NUMBER">PLATFORM_NUMBER</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
239 <option value="POSITION_QC">POSITION_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
240 <option value="PRES">PRES</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
241 <option value="PRES_ADJUSTED">PRES_ADJUSTED</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
242 <option value="PRES_ADJUSTED_ERROR">PRES_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
243 <option value="PRES_ADJUSTED_QC">PRES_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
244 <option value="PRES_DATA_MODE">PRES_DATA_MODE</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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245 <option value="PRES_QC">PRES_QC</option>
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ecology
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246 <option value="PSAL">PSAL</option>
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ecology
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247 <option value="PSAL_ADJUSTED">PSAL_ADJUSTED</option>
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ecology
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248 <option value="PSAL_ADJUSTED_ERROR">PSAL_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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249 <option value="PSAL_ADJUSTED_QC">PSAL_ADJUSTED_QC</option>
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ecology
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250 <option value="PSAL_DATA_MODE">PSAL_DATA_MODE</option>
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ecology
parents:
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251 <option value="PSAL_QC">PSAL_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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252 <option value="TEMP">TEMP</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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253 <option value="TEMP_ADJUSTED">TEMP_ADJUSTED</option>
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ecology
parents:
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254 <option value="TEMP_ADJUSTED_ERROR">TEMP_ADJUSTED_ERROR</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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255 <option value="TEMP_ADJUSTED_QC">TEMP_ADJUSTED_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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256 <option value="TEMP_QC">TEMP_QC</option>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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257 <option value="TIME_QC">TIME_QC</option>
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258 </param>
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ecology
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259 </when>
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ecology
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260 </conditional>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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261 </inputs>
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ecology
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262 <outputs>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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263 <data name="output_argo" from_work_dir="argo_data.nc" format="netcdf" label="Argo data"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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264 </outputs>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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265 <tests>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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266 <test expect_num_outputs="1">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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267 <param name="user" value="standard"/>
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ecology
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268 <param name="data_selection" value="space_time"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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269 <param name="cardinal_1" value="-75.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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270 <param name="cardinal_2" value="-45.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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271 <param name="cardinal_3" value="20.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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272 <param name="cardinal_4" value="30.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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273 <param name="pressure_1" value="0.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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274 <param name="pressure_2" value="10.0"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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275 <param name="date_1" value="2011-01"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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276 <param name="date_2" value="2011-06"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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277 <param name="data_dataset" value="phy"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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278 <output name="output_argo">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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279 <assert_contents>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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280 <has_text text="LATITUDE LONGITUDE TIME"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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281 </assert_contents>
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ecology
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282 </output>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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283 </test>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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284 <test expect_num_outputs="1">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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285 <param name="user" value="standard"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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286 <param name="data_selection" value="floats"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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287 <param name="wmo" value="6902746"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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288 <param name="data_dataset" value="phy"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
289 <output name="output_argo">
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ecology
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290 <assert_contents>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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291 <has_text text="DIMENSION_SCALE"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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292 </assert_contents>
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ecology
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293 </output>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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294 </test>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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295 <test expect_num_outputs="1">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
296 <param name="user" value="standard"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
297 <param name="data_selection" value="profiles"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
298 <param name="wmo" value="6902755"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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299 <param name="profile" value="12"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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300 <param name="data_dataset" value="phy"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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diff changeset
301 <output name="output_argo">
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ecology
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302 <assert_contents>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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303 <has_text text="Direction of the station profiles"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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304 </assert_contents>
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ecology
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305 </output>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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306 </test>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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307 <test expect_num_outputs="1">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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308 <param name="user" value="expert"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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309 <param name="data_selection" value="profiles"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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310 <param name="wmo" value="6902755"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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311 <param name="profile" value="12"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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312 <param name="data_dataset" value="phy"/>
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ecology
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313 <output name="output_argo">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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314 <assert_contents>
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ecology
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315 <has_text text="Delayed mode or real time data"/>
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ecology
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316 </assert_contents>
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ecology
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317 </output>
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ecology
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318 </test>
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ecology
parents:
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319 <test expect_num_outputs="1">
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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320 <param name="user" value="expert"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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321 <param name="data_selection" value="floats"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
322 <param name="wmo" value="6904241"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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323 <param name="data_dataset" value="bgc"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
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324 <param name="params" value="DOXY,BBP700"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
325 <output name="output_argo">
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ecology
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326 <assert_contents>
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ecology
parents:
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327 <has_text text="_NCProperties"/>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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328 </assert_contents>
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ecology
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329 </output>
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ecology
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330 </test>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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331 </tests>
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
parents:
diff changeset
332 <help><![CDATA[
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ecology
parents:
diff changeset
333 ==========================================================
8a1b829b5d27 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit e395cfee9cab90bbed58ac52fb8467c896f51824
ecology
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334 Argo data access to global ocean in situ observing system.
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ecology
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335 ==========================================================
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336 In order to ease Argo data analysis for the vast majority of standard users, we implemented in argopy different levels of verbosity and data processing to hide or simply remove variables only meaningful to experts. Let argopy manage data wrangling, and focus on your scientific analysis.
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337
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338 If you don’t know in which category you would place yourself, try to answer the following questions:
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339
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340 - [] what is a WMO number ?
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341
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342 - [] what is the difference between Delayed and Real Time data mode ?
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343
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344 - [] what is an adjusted parameter ?
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345
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346 - [] what a QC flag of 3 means ?
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347
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348 If you don’t answer to more than 1 question: you probably will feel more comfortable with the standard or research user modes.
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349
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350 By default, all argopy data fetchers are set to work with a standard user mode, the other possible modes are research and expert.
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351
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352 **What it does**
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353
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354 This tool based on argopy is able to fetch (i.e. access, download, format) Argo data into netcdf files.
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355
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356
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357 **Input description**
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358
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359 - This tool provides 3 user modes:
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360
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361 - πŸ„ expert mode return all the Argo data, without any postprocessing,
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362
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363 - 🏊 standard mode simplifies the dataset, remove most of its jargon and return a priori good data,
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364
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365 - 🚣 research mode simplifies the dataset to its heart, preserving only data of the highest quality for research studies, including studies sensitive to small pressure and salinity bias (e.g. calculations of global ocean heat content or mixed layer depth).
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366
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367 - The tool provides 3 different data selection methods:
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368
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369 - πŸ—Ί For a space/time domain (to select data for a rectangular space/time domain)
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371 - πŸ€– For one or more floats (if you know the Argo float unique identifier number called a WMO number you can use this mode)
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373 - βš“ For one or more profiles (specify the float WMO platform number and the profile cycle number(s) to retrieve profiles)
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375 - The tool can retrieve data from :
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376
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377 - ⭐ the Ifremer **erddap** server (Default). The erddap server database is updated daily and doesn’t require you to download anymore data than what you need. You can select this data source with the keyword erddap and methods described below. The Ifremer erddap dataset is based on mono-profile files of the GDAC. Since this is the most efficient method to fetcher Argo data, it’s the default data source in argopy.
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379 - With this tool you can thus get access to the following Argo data:
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380
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381 - the **phy** dataset, for physical parameters. This dataset provides data from floats that measure temperature, salinity, pressure, without limitation in depth. It is available from all Available data sources. Since this is the most common Argo data subset it’s selected with the phy keyword by default in argopy.
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382
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383 - the **bgc** dataset, for biogeochemical parameters.This dataset provides data from floats that measure temperature, salinity, pressure and oxygen, pH, nitrate, chlorophyll, backscatter, irradiance, without limitation in depth. You can select this dataset with the keyword bgc and methods described below.
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384
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385
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386 **Output**
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387
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388 You can retrieve the Argo data in one netcdf file.
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389
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390 **More about argopy**
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391
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392 https://argopy.readthedocs.io/en/latest/index.html
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393
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394 ]]></help>
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395 <expand macro="argo_bibref"/>
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396 </tool>