# HG changeset patch # User drosofff # Date 1400364838 14400 # Node ID badc26214aadd9bf107d25e81971b76f2b9c9fe4 # Parent 35fbec9e4bda0f336d18be7092d28930883d22b7 Uploaded diff -r 35fbec9e4bda -r badc26214aad yac.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/yac.xml Sat May 17 18:13:58 2014 -0400 @@ -0,0 +1,58 @@ + + + yac.py $input $output $clip_source.clip_sequence $min $max $Nmode + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +This tool clips adapter sequences from a fastq file and fasta file of clipped reads with renumbered fasta headers. + +Clipped sequences with Ns can be discarded. + +Min size and max size filter clipped reads on their size. + +Note that unclipped reads that satisfy the min and max size conditions are kept. + + + + + + + + + + + + + + + +