Mercurial > repos > drosofff > repenrich

comparison test-data/tool_wrapper.sh @ 3:89968ee4bf95 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit 114b47cc624e39b4f485c8623458fc98494c564d
author drosofff
date Mon, 29 May 2017 13:12:29 -0400
parents 041de602103e
children
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2:7864d0421273 3:89968ee4bf95
1 input_base=$1 1 input_base=Samp
2 baseReference=$2 2 baseReference=chrM
3 3
4 bowtie-build ${baseReference}.fa ${baseReference} 4 bowtie-build ${baseReference}.fa ${baseReference}
5 5
6 python RepEnrich_setup.py ${baseReference}_repeatmasker.txt ${baseReference}.fa \ 6 python RepEnrich_setup.py ${baseReference}_repeatmasker.txt ${baseReference}.fa \
7 setup_folder_${baseReference} 7 setup_folder_${baseReference}