Mercurial > repos > drosofff > package_ged_oases

comparison tool_dependencies.xml @ 3:b15d2539ae48 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Mon, 08 Jun 2015 10:45:41 -0400
parents a614e0230e5e
children 093aa3aeae64
comparison
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2:a614e0230e5e 3:b15d2539ae48
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3"> 3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
4 <repository changeset_revision="126303442158" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="f7ba2dcfa9aa" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123"> 6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action> 9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action>
10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action> 10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action>
11 <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action>
12 <action type="shell_command">sed -i -e "32s/doc//" Makefile</action>
11 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
12 <repository changeset_revision="126303442158" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="f7ba2dcfa9aa" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
13 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" /> 15 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
14 </repository> 16 </repository>
15 </action> 17 </action>
16 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action> 18 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action>
17 <action type="move_directory_files"> 19 <action type="move_directory_files">