Mercurial > repos > drosofff > package_ged_oases

comparison tool_dependencies.xml @ 2:a614e0230e5e draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 31 May 2015 11:10:33 -0400
parents 10a46b694a2a
children b15d2539ae48
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1:10a46b694a2a 2:a614e0230e5e
11 <action type="set_environment_for_install"> 11 <action type="set_environment_for_install">
12 <repository changeset_revision="126303442158" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 12 <repository changeset_revision="126303442158" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
13 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" /> 13 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
14 </repository> 14 </repository>
15 </action> 15 </action>
16 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=35</action> 16 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action>
17 <action type="move_directory_files"> 17 <action type="move_directory_files">
18 <source_directory>.</source_directory> 18 <source_directory>.</source_directory>
19 <destination_directory>$INSTALL_DIR</destination_directory> 19 <destination_directory>$INSTALL_DIR</destination_directory>
20 </action> 20 </action>
21 <!-- <action type="move_file"> 21 <!-- <action type="move_file">