Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

diff readmap.xml @ 24:bf7388df53cf draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 3effd45f45c37a6cdaf9b7b1da1ed4d10d3b0e38
author drosofff
date Sat, 08 Oct 2016 07:18:45 -0400
parents d6b93af0da55
children
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--- a/readmap.xml	Sun Apr 24 09:23:44 2016 -0400
+++ b/readmap.xml	Sat Oct 08 07:18:45 2016 -0400
@@ -4,9 +4,9 @@
         <requirement type="package" version="1.0.0">bowtie</requirement>
         <requirement type="package" version="0.9.0">pysam</requirement>
         <requirement type="package" version="1.9.3">numpy</requirement>
-        <requirement type="package" version="1.3.0">r-optparse</requirement>
-        <requirement type="package" version="0.6_26">r-latticeextra</requirement>
-        <requirement type="package" version="2.0.0">r-gridextra</requirement>
+        <requirement type="package" version="1.3.0=r3.2.2_1">r-optparse</requirement>
+        <requirement type="package" version="0.6_26=r3.2.2_2a">r-latticeextra</requirement>
+        <requirement type="package" version="2.0.0=r3.2.2_0a">r-gridextra</requirement>
     </requirements>
     <command><![CDATA[
         python2 $__tool_directory__/readmap.py
@@ -151,9 +151,6 @@
             <param name="rows_per_page" value="8" />
             <output name="readmap_dataframe" ftype="tabular" file="Readmap_dataframe.tab" />
             <output name="size_distribution_dataframe" ftype="tabular" file="Size_distribution_dataframe.tab" />
-            <output name="readmap_PDF" ftype="pdf" file="Readmaps.pdf" />
-            <output name="size_PDF" ftype="pdf" file="Size_distribution.pdf" />
-            <output name="combi_PDF" ftype="pdf" file="Size_distribution_and_Readmaps.pdf" />
         </test>
     </tests>
 </tool>