Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

comparison readmap.xml @ 2:4895f7c6ae4d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Sun, 21 Jun 2015 16:48:36 -0400
parents eee9701a7491
children f6dc63230483
comparison
equal deleted inserted replaced
1:eee9701a7491 2:4895f7c6ae4d
1 <tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.0"> 1 <tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.1">
2 <description>from sRbowtie aligment</description> 2 <description>from sRbowtie aligment</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.7">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <requirement type="package" version="0.1.18">samtools</requirement> 5 <requirement type="package" version="0.1.18">samtools</requirement>
6 <requirement type="package" version="0.7.7">pysam</requirement> 6 <requirement type="package" version="0.7.7">pysam</requirement>
7 <requirement type="package" version="2.14">biocbasics</requirement> 7 <requirement type="package" version="2.14">biocbasics</requirement>
8 <requirement type="package" version="3.0.3">R</requirement>
9 <requirement type="package" version="1.9">numpy</requirement> 8 <requirement type="package" version="1.9">numpy</requirement>
10 <requirement type="package" version="0.14">scipy</requirement>
11 </requirements> 9 </requirements>
12 <command interpreter="python"> 10 <command interpreter="python">
13 readmap.py 11 readmap.py
14 #if $refGenomeSource.genomeSource == "history": 12 #if $refGenomeSource.genomeSource == "history":
15 --reference_fasta ## sys.argv[2] 13 --reference_fasta ## sys.argv[2]