Mercurial > repos > drosofff > msp_sr_bowtie_parser

comparison sRbowtieParser.xml @ 8:8c137c778dfd draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Fri, 12 Jun 2015 06:36:43 -0400
parents a64100788fc6
children 2c25b9005680
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7:a64100788fc6 8:8c137c778dfd
1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.4"> 1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.4">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.7">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <requirement type="package" version="1.2">samtools</requirement> 5 <requirement type="package" version="1.2">samtools</requirement>
6 <requirement type="package" version="2.7">python</requirement>
7 <requirement type="package" version="0.7.7">pysam</requirement> 6 <requirement type="package" version="0.7.7">pysam</requirement>
8 <requirement type="package" version="1.9">numpy</requirement> 7 <requirement type="package" version="1.9">numpy</requirement>
9 <requirement type="package" version="0.14">scipy</requirement> 8 <requirement type="package" version="0.12">scipy</requirement>
10 </requirements> 9 </requirements>
11 <command interpreter="python"> 10 <command interpreter="python">
12 sRbowtieParser.py 11 sRbowtieParser.py
13 #if $refGenomeSource.genomeSource == "history": 12 #if $refGenomeSource.genomeSource == "history":
14 --IndexSource $refGenomeSource.ownFile 13 --IndexSource $refGenomeSource.ownFile