Mercurial > repos > drosofff > msp_sr_bowtie_parser
comparison sRbowtieParser.xml @ 2:70193ce0540e draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | mvdbeek |
|---|---|
| date | Thu, 11 Jun 2015 10:15:20 -0400 |
| parents | f5388910d083 |
| children | 3fcc752a7101 |
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| 1:f5388910d083 | 2:70193ce0540e |
|---|---|
| 1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.1"> | 1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.2"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.12.7">bowtie</requirement> | 4 <requirement type="package" version="0.12.7">bowtie</requirement> |
| 5 <requirement type="package" version="0.1.18">samtools</requirement> | 5 <requirement type="package" version="0.1.18">samtools</requirement> |
| 6 <requirement type="package" version="0.7.7">pysam</requirement> | 6 <requirement type="package" version="0.7.7">pysam</requirement> |
| 7 <requirement type="package" version="1.9">numpy</requirement> | 7 <requirement type="package" version="0.14">python_2_7_scipy</requirement> |
| 8 <requirement type="package" version="0.14">scipy</requirement> | |
| 9 </requirements> | 8 </requirements> |
| 10 <command interpreter="python"> | 9 <command interpreter="python"> |
| 11 sRbowtieParser.py | 10 sRbowtieParser.py |
| 12 #if $refGenomeSource.genomeSource == "history": | 11 #if $refGenomeSource.genomeSource == "history": |
| 13 --IndexSource $refGenomeSource.ownFile | 12 --IndexSource $refGenomeSource.ownFile |