Mercurial > repos > drosofff > msp_sr_bowtie_parser

comparison sRbowtieParser.xml @ 4:2c7f42686440 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Thu, 11 Jun 2015 12:35:45 -0400
parents 3fcc752a7101
children aa3620d405b1
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3:3fcc752a7101 4:2c7f42686440
1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.2"> 1 <tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.3">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.7">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <requirement type="package" version="1.2">samtools</requirement> 5 <requirement type="package" version="1.2">samtools</requirement>
6 <requirement type="package" version="0.7.7">pysam</requirement> 6 <requirement type="package" version="0.7.7">pysam</requirement>
7 <requirement type="package" version="0.14">python_2_7_scipy</requirement> 7 <requirement type="package" version="2.7">python</requirement>
8 <requirement type="package" version="0.14">scipy</requirement>
8 </requirements> 9 </requirements>
9 <command interpreter="python"> 10 <command interpreter="python">
10 sRbowtieParser.py 11 sRbowtieParser.py
11 #if $refGenomeSource.genomeSource == "history": 12 #if $refGenomeSource.genomeSource == "history":
12 --IndexSource $refGenomeSource.ownFile 13 --IndexSource $refGenomeSource.ownFile