Mercurial > repos > drosofff > msp_sr_bowtie_cascade
diff sRbowtieCascade.xml @ 1:0dfcb397699e draft
Uploaded
author | drosofff |
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date | Mon, 13 Apr 2015 12:31:00 -0400 |
parents | ecb041b49cd7 |
children | 0052d1dd31df |
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--- a/sRbowtieCascade.xml Mon Nov 03 10:26:15 2014 -0500 +++ b/sRbowtieCascade.xml Mon Apr 13 12:31:00 2015 -0400 @@ -1,9 +1,8 @@ -<tool id="sRbowtie_cascade" name="Annotate smRNA datasets" version="1.0.0"> +<tool id="sRbowtie_cascade" name="Annotate smRNA datasets" version="1.0.1"> <description>Using iterative sRbowtie Alignments</description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> </requirements> - <parallelism method="basic"></parallelism> <command interpreter="python"> sRbowtieCascade.py --output $output --num-threads \${GALAXY_SLOTS:-4} ## number of processors to be handled by bowtie --mismatch $mismatches @@ -94,9 +93,19 @@ <data format="tabular" name="output" label="Cascade Annotation Analysis"/> </outputs> - <test> - </test> + <tests> + <test> + <param name="input" value ="sample1.fa,sample2.fa,sample3.fa" ftype="fasta" /> + <param name="genomeSource" value="history" /> + <param name="ownFile" value ="dmel-2L-r6.04.fasta" ftype="fasta" /> + <param name="AdditionalQueries_0|refGenomeSource|genomeSource" value="history"/> + <param name="AdditionalQueries_0|refGenomeSource|ownFile" value="dme_miR21_hairpin.fa" ftype="fasta" /> + <param name="AdditionalQueries_1|refGenomeSource|genomeSource" value="history"/> + <param name="AdditionalQueries_1|refGenomeSource|ownFile" value="Ensembl_transposon_set.fa" ftype="fasta" /> + <output name="output" ftype="tabular" file="Cascade_Annotation_Analysis.tab" /> + </test> + </tests> <help> **Intro**