# HG changeset patch
# User drosofff
# Date 1443473231 14400
# Node ID 88cdd6118bfec3d9ddc2c35a21805da6903e1ce0
# Parent  950771c9b583f09064651b5c8af0a16261b611d8
planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit 763ba9879fe37a13d18d75a4a03150d3560a82f8

diff -r 950771c9b583 -r 88cdd6118bfe sRbowtie.xml
--- a/sRbowtie.xml	Thu Jul 02 08:12:43 2015 -0400
+++ b/sRbowtie.xml	Mon Sep 28 16:47:11 2015 -0400
@@ -1,8 +1,8 @@
-<tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.1">
+<tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.2">
     <description>for FASTA small reads</description>
     <requirements>
         <requirement type="package" version="0.12.7">bowtie</requirement>
-        <!-- <requirement type="package" version="1.2">samtools</requirement>  Should not be required, as samtools part of required gaalxy dependencies. -->
+        <requirement type="package" version="1.2">samtools</requirement>
     </requirements>
     <command interpreter="python"> sRbowtie.py --input $input
                                              --input-format $input.extension
diff -r 950771c9b583 -r 88cdd6118bfe tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jul 02 08:12:43 2015 -0400
+++ b/tool_dependencies.xml	Mon Sep 28 16:47:11 2015 -0400
@@ -1,11 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="bowtie" version="0.12.7">
-      <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="bowtie" version="0.12.7">
+         <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-<!-- Remove samtools, as it should be part of every galaxy installation.
     <package name="samtools" version="1.2">
-      <repository name="package_samtools_1_2" owner="iuc" prior_installation_required="False" />
+         <repository changeset_revision="9cd278d52bb6" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
--->
 </tool_dependency>