# HG changeset patch
# User drosofff
# Date 1435571618 14400
# Node ID 67a7d18a30652a4b2f941ef523bec65a979a3776
# Parent  5d82f9b15957794a30e4a062dd5187bf8a3ff34f
planemo upload for repository https://bitbucket.org/drosofff/gedtools/

diff -r 5d82f9b15957 -r 67a7d18a3065 sRbowtie.xml
--- a/sRbowtie.xml	Tue Jun 23 16:59:01 2015 -0400
+++ b/sRbowtie.xml	Mon Jun 29 05:53:38 2015 -0400
@@ -2,7 +2,7 @@
     <description>for FASTA small reads</description>
     <requirements>
         <requirement type="package" version="0.12.7">bowtie</requirement>
-        <requirement type="package" version="1.2">samtools</requirement>
+        <!-- <requirement type="package" version="1.2">samtools</requirement>  Should not be required, as samtools part of required gaalxy dependencies. -->
     </requirements>
     <command interpreter="python"> sRbowtie.py --input $input
                                              --input-format $input.extension
diff -r 5d82f9b15957 -r 67a7d18a3065 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jun 23 16:59:01 2015 -0400
+++ b/tool_dependencies.xml	Mon Jun 29 05:53:38 2015 -0400
@@ -3,7 +3,9 @@
   <package name="bowtie" version="0.12.7">
       <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+<!-- Remove samtools, as it should be part of every galaxy installation.
     <package name="samtools" version="1.2">
-      <repository changeset_revision="77e0e0891773" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+      <repository name="package_samtools_1_2" owner="iuc" prior_installation_required="False" />
     </package>
+-->
 </tool_dependency>