# HG changeset patch
# User mvdbeek
# Date 1432572276 14400
# Node ID 316124e85b8d847b6760df94217c1a4b6d97ebb8
# Parent  b50d7228b678498f3a23df5185226b8209a19d3c
planemo upload for repository https://bitbucket.org/drosofff/gedtools/

diff -r b50d7228b678 -r 316124e85b8d sRbowtie.py
--- a/sRbowtie.py	Sun Mar 29 10:25:36 2015 -0400
+++ b/sRbowtie.py	Mon May 25 12:44:36 2015 -0400
@@ -52,7 +52,7 @@
                        index="path", output="path", pslots="4"):
     if input_format == "fasta":
         input_format = "-f"
-    elif input_format == "fastq":
+    elif (input_format == "fastq") or (input_format == "fastqsanger"):
         input_format = "-q"
     else:
         raise Exception('input format must be one of fasta or fastq')
diff -r b50d7228b678 -r 316124e85b8d sRbowtie.xml
--- a/sRbowtie.xml	Sun Mar 29 10:25:36 2015 -0400
+++ b/sRbowtie.xml	Mon May 25 12:44:36 2015 -0400
@@ -44,7 +44,7 @@
                 <option value="history">Use one from the history</option>
             </param>
             <when value="indexed">
-                <param help="if your genome of interest is not listed - contact GED team" label="Select a DNA reference index" name="index" type="select">
+                <param help="if your genome of interest is not listed - contact instance administrator" label="Select a DNA reference index" name="index" type="select">
                     <options from_data_table="bowtie_indexes">
       
           </options>