Mercurial > repos > drosofff > msp_sr_bowtie

diff sRbowtie.xml @ 28:c1ae0c9ad7d1 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 65a33cc7068479ceeb6cdb371de557af475b9c86-dirty
author drosofff
date Sun, 02 Jul 2017 12:22:16 -0400
parents 2578aea69626
children 04685a1b3de1
line wrap: on
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--- a/sRbowtie.xml	Sun Jul 02 07:15:35 2017 -0400
+++ b/sRbowtie.xml	Sun Jul 02 12:22:16 2017 -0400
@@ -6,9 +6,9 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if str($refGenomeSource.genomeSource) == "history":
-            bowtie-build -f '$refGenomeSource.ownFile' local_index &&
+            bowtie-build -f $refGenomeSource.ownFile local_index &&
         #else:
-            ln -f -s '$refGenomeSource.index.fields.path' local_index &&
+            ln -f -s $refGenomeSource.index.fields.path local_index &&
         #end if
         #if $input.extension == "fasta":
             #set format = "-f"