Mercurial > repos > drosofff > msp_sr_bowtie

diff sRbowtie.py @ 12:a0bde9b84ca6 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit b6de14061c479f0418cd89e26d6f5ac26e565a07
author drosofff
date Wed, 09 Nov 2016 11:22:31 -0500
parents 5d82f9b15957
children
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--- a/sRbowtie.py	Mon Sep 28 16:47:11 2015 -0400
+++ b/sRbowtie.py	Wed Nov 09 11:22:31 2016 -0500
@@ -181,7 +181,7 @@
     else:
         tmp_dir, index_path = "dummy/dymmy", args.index_source
     command_line = bowtieCommandLiner(args.method, args.v_mismatches, args.output_format,
-                                      args.aligned, args.unaligned, args.input_format, args.input, 
+                                      args.aligned, args.unaligned, args.input_format, args.input,
                                       index_path, args.output, args.num_threads)
     bowtie_alignment(command_line, flyPreIndexed=tmp_dir)
     F.close()