Mercurial > repos > drosofff > msp_sr_bowtie

diff sRbowtie.xml @ 17:0806b5d0b5da draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 9f17bd7ad141b24f5bb3c041a059afa1c268b68f
author drosofff
date Mon, 26 Jun 2017 19:37:53 -0400
parents 57b6452f9d76
children 9fe34d55bfb0
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--- a/sRbowtie.xml	Mon Jun 26 17:36:41 2017 -0400
+++ b/sRbowtie.xml	Mon Jun 26 19:37:53 2017 -0400
@@ -46,7 +46,7 @@
 
         ## run the bowtie alignement
         #if $output_format == "tabular":
-            bowtie -p \${GALAXY_SLOTS:-4} $method_prefix  --suppress 6,7,8 $extra_output$"local_index" $format $input > $output
+            bowtie -p \${GALAXY_SLOTS:-4} $method_prefix  --suppress 6,7,8 $extra_output "local_index" $format $input > $output
         #elif $output_format == "sam":
             bowtie -p \${GALAXY_SLOTS:-4} $method_prefix $extra_output -S "local_index" $format $input > $output
         #elif $output_format == "bam":