Mercurial > repos > drosofff > msp_sr_bowtie

comparison sRbowtie.xml @ 20:ffe2430ef56d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 8bc530b9cda5534de313240340de8afb8f19b06c
author drosofff
date Mon, 26 Jun 2017 20:02:27 -0400
parents dd5985c5798d
children f752a90d266f
comparison
equal deleted inserted replaced
19:dd5985c5798d 20:ffe2430ef56d
1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2"> 1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2">
2 <description>for FASTA small reads</description> 2 <description>for FASTA small reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2=py27_2">bowtie</requirement> 4 <requirement type="package" version="1.1.2">bowtie</requirement>
5 <requirement type="package" version="1.2">samtools</requirement> 5 <requirement type="package" version="1.2">samtools</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #if $refGenomeSource.genomeSource == "history": 8 #if $refGenomeSource.genomeSource == "history":
9 bowtie-build -f '$refGenomeSource.ownFile' local_index && 9 bowtie-build -f '$refGenomeSource.ownFile' local_index &&