Mercurial > repos > drosofff > msp_sr_bowtie

comparison sRbowtie.xml @ 34:a4b8e4e579b7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 8cf5537e298d9a0e0c119ca484b95e2761780aae-dirty
author drosofff
date Sun, 02 Jul 2017 13:54:34 -0400
parents 5cb36185f910
children 2a40c37ab8d8
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33:5cb36185f910 34:a4b8e4e579b7
1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2"> 1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2">
2 <description>for FASTA small reads</description> 2 <description>for FASTA small reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2">bowtie</requirement> 4 <requirement type="package" version="1.1.2">bowtie</requirement>
5 <requirement type="package" version="1.4.1">samtools</requirement> 5 <requirement type="package" version="1.4.1=py27_0">samtools</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #if $refGenomeSource.genomeSource == "history": 8 #if $refGenomeSource.genomeSource == "history":
9 bowtie-build -f $refGenomeSource.ownFile local_index && 9 bowtie-build -f $refGenomeSource.ownFile local_index &&
10 #else: 10 #else: