Mercurial > repos > drosofff > msp_sr_bowtie

comparison sRbowtie.xml @ 11:88cdd6118bfe draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit 763ba9879fe37a13d18d75a4a03150d3560a82f8
author drosofff
date Mon, 28 Sep 2015 16:47:11 -0400
parents 950771c9b583
children a0bde9b84ca6
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10:950771c9b583 11:88cdd6118bfe
1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.1"> 1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.2">
2 <description>for FASTA small reads</description> 2 <description>for FASTA small reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.7">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <!-- <requirement type="package" version="1.2">samtools</requirement> Should not be required, as samtools part of required gaalxy dependencies. --> 5 <requirement type="package" version="1.2">samtools</requirement>
6 </requirements> 6 </requirements>
7 <command interpreter="python"> sRbowtie.py --input $input 7 <command interpreter="python"> sRbowtie.py --input $input
8 --input-format $input.extension 8 --input-format $input.extension
9 --method $method 9 --method $method
10 --v-mismatches $v_mismatches 10 --v-mismatches $v_mismatches