Mercurial > repos > drosofff > msp_sr_bowtie
comparison sRbowtie.xml @ 7:5d82f9b15957 draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | drosofff |
|---|---|
| date | Tue, 23 Jun 2015 16:59:01 -0400 |
| parents | 738a39851eae |
| children | 67a7d18a3065 |
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| 6:738a39851eae | 7:5d82f9b15957 |
|---|---|
| 53 <when value="history"> | 53 <when value="history"> |
| 54 <param format="fasta" label="Select a fasta file, to serve as index reference" name="ownFile" type="data" /> | 54 <param format="fasta" label="Select a fasta file, to serve as index reference" name="ownFile" type="data" /> |
| 55 </when> | 55 </when> |
| 56 </conditional> | 56 </conditional> |
| 57 <param help="Note that the BAM will be viewable in trackster only if you choose a full genome referenced for Trackster usage. see the doc below" label="Select output format" name="output_format" type="select"> | 57 <param help="Note that the BAM will be viewable in trackster only if you choose a full genome referenced for Trackster usage. see the doc below" label="Select output format" name="output_format" type="select"> |
| 58 <option select="true" value="tabular">tabular</option> | 58 <option selected="true" value="tabular">tabular</option> |
| 59 <option value="sam">sam</option> | 59 <option value="sam">sam</option> |
| 60 <option value="bam">bam</option> | 60 <option value="bam">bam</option> |
| 61 </param> | 61 </param> |
| 62 <param help="to get aligned and unaligned reads in fasta format" label="additional fasta output" name="additional_fasta" type="select"> | 62 <param help="to get aligned and unaligned reads in fasta format" label="additional fasta output" name="additional_fasta" type="select"> |
| 63 <option select="true" value="No">No</option> | 63 <option selected="true" value="No">No</option> |
| 64 <option value="al">aligned</option> | 64 <option value="al">aligned</option> |
| 65 <option value="unal">unaligned</option> | 65 <option value="unal">unaligned</option> |
| 66 <option value="al_and_unal">both aligned and unaligned</option> | 66 <option value="al_and_unal">both aligned and unaligned</option> |
| 67 </param> | 67 </param> |
| 68 </inputs> | 68 </inputs> |