Mercurial > repos > drosofff > msp_sr_bowtie
comparison sRbowtie.xml @ 35:2a40c37ab8d8 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 8cf5537e298d9a0e0c119ca484b95e2761780aae-dirty
author | drosofff |
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date | Sun, 02 Jul 2017 14:11:08 -0400 |
parents | a4b8e4e579b7 |
children | fec53a05f35d |
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34:a4b8e4e579b7 | 35:2a40c37ab8d8 |
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1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2"> | 1 <tool id="bowtieForSmallRNA" name="sRbowtie" version="1.2"> |
2 <description>for FASTA small reads</description> | 2 <description>for FASTA small reads</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.1.2">bowtie</requirement> | 4 <requirement type="package" version="1.2">bowtie</requirement> |
5 <requirement type="package" version="1.4.1=py27_0">samtools</requirement> | 5 <requirement type="package" version="1.4.1=py27_0">samtools</requirement> |
6 </requirements> | 6 </requirements> |
7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
8 #if $refGenomeSource.genomeSource == "history": | 8 #if $refGenomeSource.genomeSource == "history": |
9 bowtie-build -f $refGenomeSource.ownFile local_index && | 9 bowtie-build -f $refGenomeSource.ownFile local_index && |