Mercurial > repos > drosofff > msp_oases

comparison oases_optimiser.xml @ 2:6d3b484e43b0 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 15:04:44 -0400
parents 529f5ef2bfa4
children b4d1940ecc90
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1:529f5ef2bfa4 2:6d3b484e43b0
43 </inputs> 43 </inputs>
44 44
45 <outputs> 45 <outputs>
46 <data format="fasta" name="transcripts" label="${tool.name} on ${on_string}: Denovo assembled transcripts"/> 46 <data format="fasta" name="transcripts" label="${tool.name} on ${on_string}: Denovo assembled transcripts"/>
47 </outputs> 47 </outputs>
48 <tests>
49 <test>
50 <param name="input" value="input.fa" ftype="fasta"/>
51 <param name="start_hash_length" value="15" />
52 <param name="end_hash_length" value="35" />
53 <output name="transcripts" file="output.fa"/>
54 </test>
55 </tests>
48 56
49 <help> 57 <help>
50 **Oases Optimiser Overview** 58 **Oases Optimiser Overview**
51 59
52 Oases_ is a de novo transcriptome assembler specially designed to work with short reads. It is an extension of Velvet developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. 60 Oases_ is a de novo transcriptome assembler specially designed to work with short reads. It is an extension of Velvet developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.