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1 <tables>
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2 <!-- Locations of all fasta files under genome directory -->
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3 <table name="all_fasta" comment_char="#">
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4 <columns>value, dbkey, name, path</columns>
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5 <file path="tool-data/all_fasta.loc" />
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6 </table>
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7 <!-- Locations of indexes in the BFAST mapper format -->
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8 <table name="bfast_indexes" comment_char="#">
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9 <columns>value, dbkey, formats, name, path</columns>
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10 <file path="tool-data/bfast_indexes.loc" />
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11 </table>
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12 <!-- Locations of nucleotide (mega)blast databases -->
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13 <table name="blastdb" comment_char="#">
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14 <columns>value, name, path</columns>
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15 <file path="tool-data/blastdb.loc" />
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16 </table>
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17 <!-- Locations of protein (mega)blast databases -->
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18 <table name="blastdb_p" comment_char="#">
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19 <columns>value, name, path</columns>
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20 <file path="tool-data/blastdb_p.loc" />
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21 </table>
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22 <!-- Locations of indexes in the BWA mapper format -->
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23 <table name="bwa_indexes" comment_char="#">
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24 <columns>value, dbkey, name, path</columns>
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25 <file path="tool-data/bwa_index.loc" />
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26 </table>
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27 <!-- Locations of indexes in the BWA color-space mapper format -->
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28 <table name="bwa_indexes_color" comment_char="#">
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29 <columns>value, dbkey, name, path</columns>
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30 <file path="tool-data/bwa_index_color.loc" />
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31 </table>
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32 <!-- Locations of MAF files that have been indexed with bx-python -->
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33 <table name="indexed_maf_files">
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34 <columns>name, value, dbkey, species</columns>
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35 <file path="tool-data/maf_index.loc" />
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36 </table>
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37 <!-- Locations of fasta files appropriate for NGS simulation -->
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38 <table name="ngs_sim_fasta" comment_char="#">
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39 <columns>value, dbkey, name, path</columns>
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40 <file path="tool-data/ngs_sim_fasta.loc" />
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41 </table>
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42 <!-- Locations of PerM base index files -->
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43 <table name="perm_base_indexes" comment_char="#">
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44 <columns>value, name, path</columns>
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45 <file path="tool-data/perm_base_index.loc" />
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46 </table>
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47 <!-- Locations of PerM color-space index files -->
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48 <table name="perm_color_indexes" comment_char="#">
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49 <columns>value, name, path</columns>
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50 <file path="tool-data/perm_color_index.loc" />
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51 </table>
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52 <!-- Location of Picard dict file and other files -->
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53 <table name="picard_indexes" comment_char="#">
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54 <columns>value, dbkey, name, path</columns>
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55 <file path="tool-data/picard_index.loc" />
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56 </table>
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57 <!-- Location of SRMA dict file and other files -->
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58 <table name="srma_indexes" comment_char="#">
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59 <columns>value, dbkey, name, path</columns>
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60 <file path="tool-data/picard_index.loc" />
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61 </table>
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62 <!-- Location of Mosaik files -->
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63 <table name="mosaik_indexes" comment_char="#">
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64 <columns>value, dbkey, name, path</columns>
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65 <file path="tool-data/mosaik_index.loc" />
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66 </table>
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67 </tables>
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