Mercurial > repos > drosofff > mir_parser

changeset 2:c68bfbff72d5 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Thu, 13 Aug 2015 10:23:43 -0400
parents 101fec3cba04
children bf31563d22a1
files MirParser.xml tool_dependencies.xml
diffstat 2 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/MirParser.xml	Thu Aug 13 06:16:29 2015 -0400
+++ b/MirParser.xml	Thu Aug 13 10:23:43 2015 -0400
@@ -1,10 +1,11 @@
 <tool id="MirParser" name="Parse miRNAs" version="0.9.2">
-    <description>from sRbowtie aligment</description>
+    <description>from aligment files</description>
     <requirements>
         <requirement type="package" version="0.12.7">bowtie</requirement>
         <requirement type="package" version="0.7.7">pysam</requirement>
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="2.14">biocbasics</requirement>
+        <requirement type="package" version="1.2">samtools</requirement>
     </requirements>
     <command interpreter="python">
         MirParser.py 
--- a/tool_dependencies.xml	Thu Aug 13 06:16:29 2015 -0400
+++ b/tool_dependencies.xml	Thu Aug 13 10:23:43 2015 -0400
@@ -12,4 +12,7 @@
     <package name="biocbasics" version="2.14">
         <repository changeset_revision="565bfe059907" name="package_biocbasics" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="samtools" version="1.2">
+        <repository changeset_revision="9cd278d52bb6" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
 </tool_dependency>