Mercurial > repos > drosofff > mir_parser
diff test-data/dme.gff3 @ 0:035df35a257e draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | drosofff |
|---|---|
| date | Mon, 29 Jun 2015 05:50:44 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dme.gff3 Mon Jun 29 05:50:44 2015 -0400 @@ -0,0 +1,23 @@ +##gff-version 3 +##date 2014-6-22 +# +# Chromosomal coordinates of Drosophila melanogaster microRNAs +# microRNAs: miRBase v21 +# genome-build-id: BDGP5.0 +# +# Hairpin precursor sequences have type "miRNA_primary_transcript". +# Note, these sequences do not represent the full primary transcript, +# rather a predicted stem-loop portion that includes the precursor +# miRNA. Mature sequences have type "miRNA". +# +2LHet . miRNA_primary_transcript 27336 27410 . + . ID=MI0011579;Alias=MI0011579;Name=dme-mir-2490 +2LHet . miRNA 27344 27366 . + . ID=MIMAT0012197;Alias=MIMAT0012197;Name=dme-miR-2490-5p;Derives_from=MI0011579 +2LHet . miRNA 27382 27402 . + . ID=MIMAT0020911;Alias=MIMAT0020911;Name=dme-miR-2490-3p;Derives_from=MI0011579 +3R . miRNA_primary_transcript 121091 121178 . + . ID=MI0005853;Alias=MI0005853;Name=dme-mir-929 +3R . miRNA 121142 121162 . + . ID=MIMAT0005511;Alias=MIMAT0005511;Name=dme-miR-929-3p;Derives_from=MI0005853 +3R . miRNA 121107 121128 . + . ID=MIMAT0020892;Alias=MIMAT0020892;Name=dme-miR-929-5p;Derives_from=MI0005853 +3R . miRNA_primary_transcript 574386 574445 . - . ID=MI0028933;Alias=MI0028933;Name=dme-mir-9384 +3R . miRNA 574424 574445 . - . ID=MIMAT0035231;Alias=MIMAT0035231;Name=dme-miR-9384-5p;Derives_from=MI0028933 +3R . miRNA 574387 574408 . - . ID=MIMAT0035232;Alias=MIMAT0035232;Name=dme-miR-9384-3p;Derives_from=MI0028933 +X . miRNA_primary_transcript 29772 29889 . + . ID=MI0017697;Alias=MI0017697;Name=dme-mir-4915 +X . miRNA 29772 29796 . + . ID=MIMAT0020508;Alias=MIMAT0020508;Name=dme-miR-4915-5p;Derives_from=MI0017697