Mercurial > repos > drosofff > mir_parser

comparison MirParser.py @ 5:74394e39ad22 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/MirParser commit 76b92fc0dd106f009b1df4221347fd892cfdd31f
author drosofff
date Sun, 11 Jun 2017 05:56:29 -0400
parents 101fec3cba04
children
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4:933475df0fd2 5:74394e39ad22
6 # <9:10:11 filePath:FileExt:FileLabel> <.. ad lib> 6 # <9:10:11 filePath:FileExt:FileLabel> <.. ad lib>
7 7
8 import sys 8 import sys
9 import subprocess 9 import subprocess
10 10
11 from smRtools import * 11 from smRtools import HandleSmRNAwindows
12 12
13 IndexSource = sys.argv[1] 13 IndexSource = sys.argv[1]
14 ExtractionDirective = sys.argv[2] 14 ExtractionDirective = sys.argv[2]
15 if ExtractionDirective == "--do_not_extract_index": 15 if ExtractionDirective == "--do_not_extract_index":
16 genomeRefFormat = "fastaSource" 16 genomeRefFormat = "fastaSource"