Mercurial > repos > drosofff > mir_parser

annotate test-data/dme.gff3 @ 6:338d4f7c1f15 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/MirParser commit dd9d4fc7590cdbb3ceba8e34c0e890bca3ff2fb9-dirty
author drosofff
date Mon, 28 Aug 2017 12:09:25 -0400
parents 035df35a257e
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035df35a257e planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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1 ##gff-version 3
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2 ##date 2014-6-22
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3 #
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4 # Chromosomal coordinates of Drosophila melanogaster microRNAs
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5 # microRNAs: miRBase v21
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6 # genome-build-id: BDGP5.0
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7 #
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8 # Hairpin precursor sequences have type "miRNA_primary_transcript".
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9 # Note, these sequences do not represent the full primary transcript,
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10 # rather a predicted stem-loop portion that includes the precursor
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11 # miRNA. Mature sequences have type "miRNA".
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12 #
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13 2LHet . miRNA_primary_transcript 27336 27410 . + . ID=MI0011579;Alias=MI0011579;Name=dme-mir-2490
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14 2LHet . miRNA 27344 27366 . + . ID=MIMAT0012197;Alias=MIMAT0012197;Name=dme-miR-2490-5p;Derives_from=MI0011579
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15 2LHet . miRNA 27382 27402 . + . ID=MIMAT0020911;Alias=MIMAT0020911;Name=dme-miR-2490-3p;Derives_from=MI0011579
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16 3R . miRNA_primary_transcript 121091 121178 . + . ID=MI0005853;Alias=MI0005853;Name=dme-mir-929
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17 3R . miRNA 121142 121162 . + . ID=MIMAT0005511;Alias=MIMAT0005511;Name=dme-miR-929-3p;Derives_from=MI0005853
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18 3R . miRNA 121107 121128 . + . ID=MIMAT0020892;Alias=MIMAT0020892;Name=dme-miR-929-5p;Derives_from=MI0005853
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19 3R . miRNA_primary_transcript 574386 574445 . - . ID=MI0028933;Alias=MI0028933;Name=dme-mir-9384
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20 3R . miRNA 574424 574445 . - . ID=MIMAT0035231;Alias=MIMAT0035231;Name=dme-miR-9384-5p;Derives_from=MI0028933
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21 3R . miRNA 574387 574408 . - . ID=MIMAT0035232;Alias=MIMAT0035232;Name=dme-miR-9384-3p;Derives_from=MI0028933
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22 X . miRNA_primary_transcript 29772 29889 . + . ID=MI0017697;Alias=MI0017697;Name=dme-mir-4915
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23 X . miRNA 29772 29796 . + . ID=MIMAT0020508;Alias=MIMAT0020508;Name=dme-miR-4915-5p;Derives_from=MI0017697