Mercurial > repos > drosofff > fetch_fasta_from_ncbi

diff retrieve_fasta_from_NCBI.xml @ 6:fe9549854fa2 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sat, 30 May 2015 18:05:25 -0400
parents aa61d63b7e31
children f57ebdc7ad56
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--- a/retrieve_fasta_from_NCBI.xml	Sat May 30 17:57:09 2015 -0400
+++ b/retrieve_fasta_from_NCBI.xml	Sat May 30 18:05:25 2015 -0400
@@ -3,7 +3,7 @@
   <command interpreter="python">retrieve_fasta_from_NCBI.py -i "$queryString" -d $dbname -o $outfilename -l $logfile </command>
 
   <inputs>
-    <param name="queryString" type="text" size="5x80" area="True" value="txid10239[orgn] NOT txid131567[orgn] AND complete NOT partial[title] NOT phage[title]" label="Query to NCBI in entrez format" help="exemple:'Drosophila melanogaster[Organism] AND Gcn5[Title]">
+    <param name="queryString" type="text" size="5x80" area="True" value="txid10239[orgn] NOT txid131567[orgn] AND complete[all] NOT partial[title] NOT phage[title]" label="Query to NCBI in entrez format" help="exemple:'Drosophila melanogaster[Organism] AND Gcn5[Title]">
       <sanitizer>
         <valid initial="string.printable">
           <remove value="&quot;"/>