Mercurial > repos > drosofff > blastn_to_scaffold

comparison blastn_to_scaffold.py @ 1:ef007adcbbf8 draft default tip

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sat, 20 Jun 2015 07:55:35 -0400
parents 7b4212122a49
children
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0:7b4212122a49 1:ef007adcbbf8
89 orientation = "reverse" 89 orientation = "reverse"
90 else: 90 else:
91 orientation = "direct" 91 orientation = "direct"
92 sequence = getseq (ContigsDict, seqHeader, queryStart, queryStop, orientation) 92 sequence = getseq (ContigsDict, seqHeader, queryStart, queryStop, orientation)
93 for i in range(subjectStart, subjectStop+1): 93 for i in range(subjectStart, subjectStop+1):
94 del GuideDict[i] 94 try:
95 del GuideDict[i]
96 except KeyError:
97 continue
95 for i, nucleotide in enumerate(sequence): 98 for i, nucleotide in enumerate(sequence):
96 GuideDict[i+subjectStart] = nucleotide 99 GuideDict[i+subjectStart] = nucleotide
97 100
98 def finalAssembly (GuideDict, outputfile): 101 def finalAssembly (GuideDict, outputfile):
99 finalSeqList = [] 102 finalSeqList = []