Mercurial > repos > dfornika > uvp

changeset 8:888953979f8c draft default tip

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"planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/uvp commit d0b060e7d9cc9fd89926dbc07fc93c8a1471b3fe-dirty"
author dfornika
date Mon, 28 Oct 2019 18:36:17 -0400
parents 679d120f8c09
children
files uvp.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/uvp.xml	Fri Oct 11 21:07:46 2019 -0400
+++ b/uvp.xml	Mon Oct 28 18:36:17 2019 -0400
@@ -20,6 +20,7 @@
         #end if
         uvp
             --threads \${GALAXY_SLOTS:-1}
+            --verbose
             #if $single_paired.single_paired_selector == 'yes'
                 -n 'sample'
                 -q 'R1.fastq.gz'
@@ -66,6 +67,7 @@
     <outputs>
         <data name="lineage_report" label="Lineage Report" format="tabular" from_work_dir="Results/sample/sample.lineage_report.txt"/>
         <data name="validation_report" label="Validation Report" format="tabular" from_work_dir="Results/sample/validation/Validation_report.txt"/>
+	<data name="kraken_report" label="Kraken Report" format="tabular" from_work_dir="Results/sample/kraken/final_report.txt"/>
         <data name="low_quals" label="Low-quality" format="tabular" from_work_dir="QC/low_quals.txt"/>
     </outputs>
     <tests>