# HG changeset patch
# User dfornika
# Date 1574482534 0
# Node ID 9d2ddea2cde9675b17a753e83976aeb0ae0d6d98
# Parent  9a8952794df5d6084ae2c8b85aa94f6936e15794
Uploaded

diff -r 9a8952794df5 -r 9d2ddea2cde9 tetyper.xml
--- a/tetyper.xml	Sat Nov 23 04:04:50 2019 +0000
+++ b/tetyper.xml	Sat Nov 23 04:15:34 2019 +0000
@@ -1,5 +1,5 @@
 <tool id="tetyper" name="TETyper" version="1.1+galaxy0">
-    <description></description>
+    <description>Transposable Element Typer</description>
     <requirements>
         <requirement type="package" version="1.1">tetyper</requirement>
     </requirements>
@@ -10,7 +10,7 @@
             #if $collection_paired.selector == "paired"
                 --fq1 '${collection_paired.forward_input}' --fq2'${collection_paired.reverse_input}'
             #elif $collection_paired.selector == "collection":
-                --fq1 '${single_paired.input_pair.forward}' --fq2 '${single_paired.input_pair.reverse}'
+                --fq1 '${collection_paired.input_pair.forward}' --fq2 '${collection_paired.input_pair.reverse}'
             #end if
             --ref '${reference}'
             --flank_length '${flank_length}'
@@ -24,11 +24,11 @@
                 <option value="paired" selected="True">Paired</option>
             </param>
             <when value="collection">
-                <param format="fastq" name="input_pair" type="data_collection" collection_type="paired" label="Collection of paired reads" help="FASTQ datasets" />
+                <param format="fastq,fastq.gz" name="input_pair" type="data_collection" collection_type="paired" label="Collection of paired reads" help="FASTQ datasets" />
             </when>
             <when value="paired">
-                <param format="fastq" name="forward_input" type="data" label="Forward strand" help="FASTQ dataset"/>
-                <param format="fastq" name="reverse_input" type="data" label="Reverse strand" help="FASTQ dataset"/>
+                <param format="fastq,fastq.gz" name="forward_input" type="data" label="Forward strand" help="FASTQ dataset"/>
+                <param format="fastq,fastq.gz" name="reverse_input" type="data" label="Reverse strand" help="FASTQ dataset"/>
             </when>
         </conditional>
         <param name="reference" type="data" format="fasta"/>