# HG changeset patch
# User dfornika
# Date 1579913420 0
# Node ID 3ac93a6e4687a54d75ee41ea20b89cb0feb232ba
# Parent  75cfb1377da182ac7333fe7ea841cd82cf6e25ca
"planemo upload commit f1b3e36f79747fca391321389276ac196d3f7cd0-dirty"

diff -r 75cfb1377da1 -r 3ac93a6e4687 snippy.xml
--- a/snippy.xml	Sat Jan 25 00:43:51 2020 +0000
+++ b/snippy.xml	Sat Jan 25 00:50:20 2020 +0000
@@ -52,11 +52,11 @@
             #end if
 
         #if "outcon" in str($outputs) and $adv.rename_cons
-          && sed -i 's/>.*/>${dir_name}/' ${dir_name}/snps.consensus.fa
+          && sed -i 's/>.*/>${dir_name}/' '${dir_name}/snps.consensus.fa'
         #end if
         
-        && mv ${dir_name} out
-        && tar -czf out.tgz out
+        && cp -r '${dir_name}' out
+        && tar -czf out.tgz '${dir_name}'
     ]]>    </command>
 
     <inputs>