Mercurial > repos > dfornika > snippy

diff snippy_core_wrapper.py @ 15:bf6dbc4d4957 draft

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planemo upload for repository https://github.com/tseemann/snippy commit 93b22331ca83a82fdfbe8f2b274577e21f9bf025-dirty
author dfornika
date Tue, 22 Jan 2019 13:26:27 -0500
parents c92d935dc8ab
children a69f73853101
line wrap: on
line diff
--- a/snippy_core_wrapper.py	Tue Jan 22 13:00:21 2019 -0500
+++ b/snippy_core_wrapper.py	Tue Jan 22 13:26:27 2019 -0500
@@ -27,9 +27,9 @@
 
     snippy_core_command_line = ['snippy-core', '--ref', args.ref]
 
-    for indir in args.indirs.split(','):
+    for input_datasets in args.input_datasets.split(','):
         base_name = os.path.basename(indir)
-        copyfile(indir, base_name)
+        copyfile(indir, '.')
         subprocess.Popen(['tar', '-xf', base_name])
 
     extracted_dirs = [f for f in os.listdir('.') if os.path.isdir(f) ]