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comparison snippy.xml @ 32:3ac93a6e4687 draft default tip

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"planemo upload commit f1b3e36f79747fca391321389276ac196d3f7cd0-dirty"
author dfornika
date Sat, 25 Jan 2020 00:50:20 +0000
parents 20b52007c4dc
children
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31:75cfb1377da1 32:3ac93a6e4687
50 #elif str( $fastq_input.fastq_input_selector ) == "paired_iv" 50 #elif str( $fastq_input.fastq_input_selector ) == "paired_iv"
51 --peil '$fastq_input.fastq_input_interleaved' 51 --peil '$fastq_input.fastq_input_interleaved'
52 #end if 52 #end if
53 53
54 #if "outcon" in str($outputs) and $adv.rename_cons 54 #if "outcon" in str($outputs) and $adv.rename_cons
55 && sed -i 's/>.*/>${dir_name}/' ${dir_name}/snps.consensus.fa 55 && sed -i 's/>.*/>${dir_name}/' '${dir_name}/snps.consensus.fa'
56 #end if 56 #end if
57 57
58 && mv ${dir_name} out 58 && cp -r '${dir_name}' out
59 && tar -czf out.tgz out 59 && tar -czf out.tgz '${dir_name}'
60 ]]> </command> 60 ]]> </command>
61 61
62 <inputs> 62 <inputs>
63 <expand macro="reference_selector" /> 63 <expand macro="reference_selector" />
64 <conditional name="fastq_input"> 64 <conditional name="fastq_input">