Mercurial > repos > dfornika > screen_abricate_report

comparison screen_abricate_report.xml @ 2:378696e5f81c draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
author dfornika
date Fri, 27 Sep 2019 13:34:45 -0400
parents 40003338a8e8
children 1c1c680c70a0
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1:40003338a8e8 2:378696e5f81c
3 <requirements> 3 <requirements>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 '${__tool_directory__}/screen_abricate_report.py' 6 '${__tool_directory__}/screen_abricate_report.py'
7 '${abricate_report}' 7 '${abricate_report}'
8 --screen '${screening_file.fields.path}' 8 --screening_file '${screening_file.fields.path}'
9 --screened_report '${screened_report}' 9 --screened_report '${screened_report}'
10 --gene_detection_status '${gene_detection_status}' 10 --gene_detection_status '${gene_detection_status}'
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param name="abricate_report" type="data" format="tabular" /> 13 <param name="abricate_report" type="data" format="tabular" />