Mercurial > repos > dfornika > render_tree

diff render_tree.R @ 0:342fe8c2d8bb draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
author dfornika
date Sat, 29 Jun 2019 00:13:08 -0400
parents
children 9f0241ee55e8
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/render_tree.R	Sat Jun 29 00:13:08 2019 -0400
@@ -0,0 +1,18 @@
+#!/usr/bin/env Rscript
+
+suppressMessages(
+  library(ggtree)
+)
+
+args = commandArgs(trailingOnly=TRUE)
+
+tree <- read.tree(args[1])
+
+tree_plot <- ggplot(tree, aes(x, y)) + 
+  geom_tree() + 
+  theme_tree2() +
+  geom_tiplab()
+
+suppressMessages(
+  ggsave(args[2], plot=tree_plot, device="png")
+)