Mercurial > repos > dfornika > render_tree
comparison render_tree.xml @ 0:342fe8c2d8bb draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
| author | dfornika |
|---|---|
| date | Sat, 29 Jun 2019 00:13:08 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:342fe8c2d8bb |
|---|---|
| 1 <tool id="render_tree" name="render tree" version="0.1.0"> | |
| 2 <description>render a newick tree</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.16">bioconductor-ggtree</requirement> | |
| 5 </requirements> | |
| 6 <version_command>echo '0.1.0'</version_command> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 $__tool_directory__/render_tree.R | |
| 9 '${tree}' | |
| 10 '${image}' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="tree" type="data" format="nhx" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="image" format="png" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 </tests> | |
| 20 <help><![CDATA[ | |
| 21 ]]></help> | |
| 22 <citations> | |
| 23 <citation type="bibtex"> | |
| 24 @article{yu2017ggtree, | |
| 25 title={ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data}, | |
| 26 author={Yu, Guangchuang and Smith, David K and Zhu, Huachen and Guan, Yi and Lam, Tommy Tsan-Yuk}, | |
| 27 journal={Methods in Ecology and Evolution}, | |
| 28 volume={8}, | |
| 29 number={1}, | |
| 30 pages={28--36}, | |
| 31 year={2017}, | |
| 32 publisher={Wiley Online Library} | |
| 33 } | |
| 34 </citation> | |
| 35 </citations> | |
| 36 </tool> |