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annotate render_tree.xml @ 2:96406ba2696b draft default tip

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
author dfornika
date Sat, 29 Jun 2019 00:54:28 -0400
parents 342fe8c2d8bb
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342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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1 <tool id="render_tree" name="render tree" version="0.1.0">
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2 <description>render a newick tree</description>
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3 <requirements>
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4 <requirement type="package" version="1.16">bioconductor-ggtree</requirement>
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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5 </requirements>
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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6 <version_command>echo '0.1.0'</version_command>
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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7 <command detect_errors="exit_code"><![CDATA[
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8 $__tool_directory__/render_tree.R
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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9 '${tree}'
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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10 '${image}'
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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11 ]]></command>
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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12 <inputs>
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13 <param name="tree" type="data" format="nhx" />
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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14 </inputs>
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15 <outputs>
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16 <data name="image" format="png" />
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17 </outputs>
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18 <tests>
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19 </tests>
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20 <help><![CDATA[
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21 ]]></help>
342fe8c2d8bb planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/render_tree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
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22 <citations>
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23 <citation type="bibtex">
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24 @article{yu2017ggtree,
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25 title={ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data},
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26 author={Yu, Guangchuang and Smith, David K and Zhu, Huachen and Guan, Yi and Lam, Tommy Tsan-Yuk},
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27 journal={Methods in Ecology and Evolution},
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28 volume={8},
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29 number={1},
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30 pages={28--36},
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31 year={2017},
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32 publisher={Wiley Online Library}
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33 }
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34 </citation>
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35 </citations>
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36 </tool>