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comparison readucks.xml @ 0:1710fc590220 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/readucks commit 5803dd6efc58e812f3181261b290039bfe011602-dirty"
author dfornika
date Tue, 10 Mar 2020 15:20:39 +0000
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-1:000000000000 0:1710fc590220
1 <tool id="readucks" name="readucks" version="@TOOL_VERSION@+galaxy0">
2 <description>Nanopore read de-multiplexer</description>
3 <macros>
4 <token name="@TOOL_VERSION@">0.0.2</token>
5 </macros>
6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">readucks</requirement>
8 </requirements>
9 <command detect_errors="exit_code">
10 <![CDATA[
11 mkdir demuxed &&
12 readucks
13 -t \${GALAXY_SLOTS:-1}
14 -i ${input_fastq}
15 --threshold '${barcode_identity_threshold}'
16 --bin_barcodes
17 --native_barcodes
18 -o demuxed
19 ]]>
20 </command>
21 <inputs>
22 <param format="fastq,fastqsanger" name="input_fastq" type="data" label="FASTQ Input" help="FASTQ dataset"/>
23 <outputs>
24 <data name="barcode_NB01" format="fastq" from_work_dir="demuxed/NB01.fastq" label="${tool.name} on ${on_string}: Barcode 01"/>
25 <data name="barcode_NB02" format="fastq" from_work_dir="demuxed/NB02.fastq" label="${tool.name} on ${on_string}: Barcode 02"/>
26 <data name="barcode_NB03" format="fastq" from_work_dir="demuxed/NB02.fastq" label="${tool.name} on ${on_string}: Barcode 03"/>
27 <data name="barcode_NB04" format="fastq" from_work_dir="demuxed/NB02.fastq" label="${tool.name} on ${on_string}: Barcode 04"/>
28 <data name="unassigned" format="fastq" from_work_dir="demuxed/unassigned.fastq" label="${tool.name} on ${on_string}: Unassigned"/>
29 </outputs>
30 <tests>
31 <test>
32 <param name="input_fastq" value="simulated_badreads_1_first100reads.fastq" />
33 <output name="barcode_NB02" ftype="fastq" file="demuxed/NB02.fastq" />
34 </test>
35 </tests>
36 <help>
37 <![CDATA[
38 ]]>
39 </help>
40 <citations>
41 </citations>
42 </tool>