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changeset 0:33035fc236b2 draft default tip

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/quicktree commit 8898f2229ec13917b7d96e20725f3871d9d93e90-dirty
author dfornika
date Fri, 28 Jun 2019 22:59:45 -0400
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files quicktree.xml test-data/distance_matrix.phy test-data/tree.nhx
diffstat 3 files changed, 58 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/quicktree.xml	Fri Jun 28 22:59:45 2019 -0400
@@ -0,0 +1,30 @@
+<tool id="quicktree" name="quicktree" version="2.4">
+    <description>quicktree</description>
+    <requirements>
+        <requirement type="package" version="2.4">quicktree</requirement>
+    </requirements>
+    <version_command>quicktree -v</version_command>
+    <command detect_errors="exit_code"><![CDATA[
+        quicktree
+          -in m
+          -out t
+          '${matrix}'
+          > '${tree}'
+    ]]></command>
+    <inputs>
+        <param name="matrix" type="data" format="phylip" />
+    </inputs>
+    <outputs>
+        <data name="tree" format="nhx" />
+    </outputs>
+    <tests>
+        <test>
+          <param name="matrix" value="distance_matrix.phy"/>
+	  <output name="tree" value="tree.nhx"/>
+	</test>
+    </tests>
+    <help><![CDATA[
+    ]]></help>
+    <citations>
+    </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/distance_matrix.phy	Fri Jun 28 22:59:45 2019 -0400
@@ -0,0 +1,9 @@
+    8
+A           0.0000  0.0135  0.0119  0.0391  0.0439  0.0111  0.0029  0.0000
+B           0.0135  0.0000  0.0070  0.0348  0.0563  0.0081  0.0152  0.0136
+C           0.0119  0.0070  0.0000  0.0318  0.0591  0.0013  0.0149  0.0119
+D           0.0391  0.0348  0.0318  0.0000  0.0550  0.0307  0.0407  0.0392
+E           0.0439  0.0563  0.0591  0.0550  0.0000  0.0574  0.0384  0.0441
+F           0.0111  0.0081  0.0013  0.0307  0.0574  0.0000  0.0140  0.0111
+G           0.0029  0.0152  0.0149  0.0407  0.0384  0.0140  0.0000  0.0030
+H           0.0000  0.0136  0.0119  0.0392  0.0441  0.0111  0.0030  0.0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tree.nhx	Fri Jun 28 22:59:45 2019 -0400
@@ -0,0 +1,19 @@
+(
+(
+(
+(
+F:0.00037,
+C:0.00093)
+:0.00242,
+B:0.00448)
+:0.00500,
+(
+E:0.03441,
+D:0.02059)
+:0.00888)
+:0.00307,
+G:0.00154,
+(
+H:0.00000,
+A:0.00000)
+:0.00141);