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"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/prokka commit d0b060e7d9cc9fd89926dbc07fc93c8a1471b3fe-dirty"
author dfornika
date Tue, 29 Oct 2019 16:53:28 -0400
parents 0f4abf21c415
children
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0:0f4abf21c415 1:9378a784ce30
1 <tool id="prokka" name="Prokka" version="1.13"> 1 <tool id="prokka" name="Prokka" version="1.14">
2 <description>Prokaryotic genome annotation</description> 2 <description>Prokaryotic genome annotation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.13">prokka</requirement> 4 <requirement type="package" version="1.14">prokka</requirement>
5 </requirements> 5 </requirements>
6 6
7 <version_command>prokka --version</version_command> 7 <version_command>prokka --version</version_command>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 prokka 9 prokka
199 </assert_contents> 199 </assert_contents>
200 </output> 200 </output>
201 </test> 201 </test>
202 </tests> 202 </tests>
203 <help><![CDATA[ 203 <help><![CDATA[
204 **What it does**
205
206 Prokka_ is a software tool to rapidly annotate bacterial, archaeal and viral genomes, and produce output files that require only minor tweaking to submit to GenBank/ENA/DDBJ.
207
208 .. _Prokka: http://github.com/tseemann/prokka
209
210 **Output files**
211
212 Prokka creates several output files, which are described in the **Additional outputs** section above.
213
214 **License and citation**
215
216 This Galaxy tool is Copyright © 2013 Lionel Guy, © 2013-2014 `CRS4 Srl.`_, © 2015-2016 `Earlham Institute`_, 2018 `Galaxy IUC` and is released under the `MIT license`_.
217
218 .. _CRS4 Srl.: http://www.crs4.it/
219 .. _Earlham Institute: http://earlham.ac.uk/
220 .. _MIT license: https://opensource.org/licenses/MIT
221
222 You can use this tool only if you agree to the license terms of: `Prokka`_.
223
224 .. _Prokka: http://github.com/tseemann/prokka
225 ]]></help> 204 ]]></help>
226 <citations> 205 <citations>
227 <citation type="doi">10.1093/bioinformatics/btu135</citation> 206 <citation type="doi">10.1093/bioinformatics/btu135</citation>
228 <citation type="doi">10.1093/bioinformatics/btu153</citation> 207 <citation type="doi">10.1093/bioinformatics/btu153</citation>
229 </citations> 208 </citations>