# HG changeset patch # User dfornika # Date 1572990582 18000 # Node ID a2ae7a82227d41fb75b4029d73a4919ce48f0604 "planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/mob_typer commit dcdac86bce5c44043516fbd472ab7c19d7bf4d50-dirty" diff -r 000000000000 -r a2ae7a82227d mob_typer.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mob_typer.xml Tue Nov 05 16:49:42 2019 -0500 @@ -0,0 +1,81 @@ + + Get the plasmid type and mobility given its sequence + + mob_suite + + + + + + +
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+ + + + + + + + + + + + + + + +**Syntax** + +This tool provides *in-silico* predictions on plasmid typing including identification of replicon, relaxase and mate-pair formation protein types. MOB-typer also predicts mobility of a plasmid (Conjugative, Mobilizable, Non-mobilizable). Do not include multiple unrelated plasmids in the input FASTA file as they will be treated as a single plasmid. + +For more information please visit https://github.com/phac-nml/mob-suite/. + +----- + +**Input:** + +A FASTA file with a single or multiple contigs (e.g. plasmid.fasta): + + +**Output:** + +Tab-delimited report listing identified plasmid(s) and their predicted mobility. Refer to https://github.com/phac-nml/mob-suite#mob-typer-report-file-format for the description of each column. + + + + + + @misc{githubmob-suite, + author = {Robertson J, Nash J}, + title = {MOB-Suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies.}, + publisher = {GitHub}, + journal = {GitHub repository}, + doi = {10.1099/mgen.0.000206}, + url = {https://github.com/phac-nml/mob-suite} + } + +