Mercurial > repos > dfornika > mob_suite
diff mob_recon.xml @ 51:4e818dfe0f23 draft default tip
"planemo upload for repository https://github.com/phac-nml/mob-suite commit ab13ec30d5f68d86e535356ce452230617d4d7d1-dirty"
| author | dfornika |
|---|---|
| date | Wed, 11 Dec 2019 22:19:55 +0000 |
| parents | 20dc7e1d2f4c |
| children |
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--- a/mob_recon.xml Wed Dec 11 18:41:50 2019 +0000 +++ b/mob_recon.xml Wed Dec 11 22:19:55 2019 +0000 @@ -66,11 +66,11 @@ </section> </inputs> <outputs> - <data name="contig_report" format="tabular" from_work_dir="outdir/contig_report.txt" label="${tool.name} on ${on_string}: Overall contig MOB-recon report"/> - <data name="repetitive_blast_report" format="tabular" from_work_dir="outdir/repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/> - <data name="mobtyper_aggregate_report" format="tabular" from_work_dir="outdir/mobtyper_aggregate_report.txt" label="${tool.name} on ${on_string}: Aggregate MOB-typer report for all contigs"/> - <data name="chromosome" format="fasta" from_work_dir="outdir/chromosome.fasta" label="${tool.name} on ${on_string}: Chromosomal sequences"/> - <collection name="plasmids" type="list" label="${tool.name} on ${on_string}: Plasmids"> + <data name="contig_report" format="tabular" from_work_dir="outdir/contig_report.txt" label="${tool.name} on ${input.element_identifier}: Overall contig MOB-recon report"/> + <data name="repetitive_blast_report" format="tabular" from_work_dir="outdir/repetitive_blast_report.txt" label="${tool.name} on ${input.element_identifier}: Repetitive elements BLAST report"/> + <data name="mobtyper_aggregate_report" format="tabular" from_work_dir="outdir/mobtyper_aggregate_report.txt" label="${tool.name} on ${input.element_identifier}: Aggregate MOB-typer report for all contigs"/> + <data name="chromosome" format="fasta" from_work_dir="outdir/chromosome.fasta" label="${tool.name} on ${input.element_identifier}: Chromosomal sequences"/> + <collection name="plasmids" type="list" label="${tool.name} on ${input.element_identifier}: Plasmids"> <discover_datasets pattern="__name_and_ext__" directory="outdir/plasmids" /> </collection> </outputs>