Mercurial > repos > dfornika > mob_suite
comparison mob_recon.xml @ 51:4e818dfe0f23 draft default tip
"planemo upload for repository https://github.com/phac-nml/mob-suite commit ab13ec30d5f68d86e535356ce452230617d4d7d1-dirty"
| author | dfornika |
|---|---|
| date | Wed, 11 Dec 2019 22:19:55 +0000 |
| parents | 20dc7e1d2f4c |
| children |
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| 50:82e55a181434 | 51:4e818dfe0f23 |
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| 64 <param name="min_con_ident" label="Minimum sequence identity for contigs" type="integer" min="0" max="100" value="80"/> | 64 <param name="min_con_ident" label="Minimum sequence identity for contigs" type="integer" min="0" max="100" value="80"/> |
| 65 <param name="min_rpp_ident" label="Minimum sequence identity for repetitive elements" type="integer" min="0" max="100" value="80"/> | 65 <param name="min_rpp_ident" label="Minimum sequence identity for repetitive elements" type="integer" min="0" max="100" value="80"/> |
| 66 </section> | 66 </section> |
| 67 </inputs> | 67 </inputs> |
| 68 <outputs> | 68 <outputs> |
| 69 <data name="contig_report" format="tabular" from_work_dir="outdir/contig_report.txt" label="${tool.name} on ${on_string}: Overall contig MOB-recon report"/> | 69 <data name="contig_report" format="tabular" from_work_dir="outdir/contig_report.txt" label="${tool.name} on ${input.element_identifier}: Overall contig MOB-recon report"/> |
| 70 <data name="repetitive_blast_report" format="tabular" from_work_dir="outdir/repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/> | 70 <data name="repetitive_blast_report" format="tabular" from_work_dir="outdir/repetitive_blast_report.txt" label="${tool.name} on ${input.element_identifier}: Repetitive elements BLAST report"/> |
| 71 <data name="mobtyper_aggregate_report" format="tabular" from_work_dir="outdir/mobtyper_aggregate_report.txt" label="${tool.name} on ${on_string}: Aggregate MOB-typer report for all contigs"/> | 71 <data name="mobtyper_aggregate_report" format="tabular" from_work_dir="outdir/mobtyper_aggregate_report.txt" label="${tool.name} on ${input.element_identifier}: Aggregate MOB-typer report for all contigs"/> |
| 72 <data name="chromosome" format="fasta" from_work_dir="outdir/chromosome.fasta" label="${tool.name} on ${on_string}: Chromosomal sequences"/> | 72 <data name="chromosome" format="fasta" from_work_dir="outdir/chromosome.fasta" label="${tool.name} on ${input.element_identifier}: Chromosomal sequences"/> |
| 73 <collection name="plasmids" type="list" label="${tool.name} on ${on_string}: Plasmids"> | 73 <collection name="plasmids" type="list" label="${tool.name} on ${input.element_identifier}: Plasmids"> |
| 74 <discover_datasets pattern="__name_and_ext__" directory="outdir/plasmids" /> | 74 <discover_datasets pattern="__name_and_ext__" directory="outdir/plasmids" /> |
| 75 </collection> | 75 </collection> |
| 76 </outputs> | 76 </outputs> |
| 77 <tests> | 77 <tests> |
| 78 <test> | 78 <test> |